RnoINT0086050 @ rn6
Intron Retention
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51354256-51361127:+
Coord C1 exon
chr15:51354256-51354499
Coord A exon
chr15:51354500-51361011
Coord C2 exon
chr15:51361012-51361127
Length
6512 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GCTCTGTTTCTGGCTGCCAGGCA
3' ss Score
6.71
Exon sequences
Seq C1 exon
CTGCACCTGACCTGGTACTTAACGCCGAGATTGTACAACAGACCGCCTATCTGGAGGACAGGCCCATGGCCTTGCTGCAGTGTGCCATGGAGGAAAACTGCCTCTCAGCCTCCGCTGTGCACACCGATCCCACCAGAGGCCACCGTCGCCTTCTACGCTTCTCTTCCCAGATCCACAACAATGGCCAATCTGACTTCCGCCCCAAGAATGGCCGCCATGCATGGATTTGGCATGACTGCCACAG
Seq A exon
GTAGGTCATATCTTCTTTAGTCAGCCAGTTACCCAGCCTGGTGTTCTAAACCCAGAACAGAGATCTAGAGTCAGCTCAAGAAGGCGTTGTTGCATGATCTAGGTAAAAGAGTAGTCTGCACCCCTGAAAGCCATTCTCCACTCCCAGCTCACTGGCTGCCCCTCCCTCTTTTGCTGAGTCCCTGGCTCCTGGCTCCAGTGATTTTGATCCTAGGAGACATGCTGATCTGAGTGCCAGTGCCCTCCAGGGACCTTGTCAGCAGTTTCTGAGTGCATGGACAATACATTTGTGCTCTATGGGGAACATTCTCCTATATATAGCCTTGAACCCTCTGTCCATATAGACATATATTTTTGCACACTAATAATGAGGGGTTTTTTTTAGGTTAGAAATTAAAGGTAGCCTACAAAGTAATGGGTTCCATTCCGGCATTTGTATTCAGGTGGTCATCCTTTTAATGATTCCTTTCCCCTGCTGCCACTTCAAATCTCCCTTGCTCCTCCTTTTAACTTAGTATTTTCAATATCTCTAAGAAGACAGGGGATACAGAGATAGGAGTTCCAGGACTCAGAGTCATGAGACCTAGTGTAAGCCTGCTAACCTCCTGATCAGCAGTCTGACATTAGGCCAACTGGGCCACATTGCCTGGGACTTCTGGGCTCCCTCATCTGTGGCTGTGATCCAGGTGCTGTGAAGACTGGATCAGGACAGTAGAATAGAGGAAAATCCTCCAGCCAGTCCCACCATGGTCCATGGAAGCTCCCTGGACCTCCTCCCTCCTATGTTCCCTTTGCTCTTCTTGACGTGACTCGAATTCAGACATTTTGTTCTTAGTCTGAGCAAGTAGAGGACACTGCATGCATGTGGTTGGAAGAGCAGCTACCATTGTTCCTTACATCAGGAATCCCTCTTCTAGAGGTTGATAAACTTCTAATAGATCTTGTTATCTGGGCTTAAATAATCCATCTGTGACAGGAAATGTTTGAACTAGATCATAGCCTTTCAAAGCAAGGCCCTTGGACTGCTGTATCCACCATCACAGTGAGATCCGGGGCATGCTCTGTGCCACAGCTGGCTGCAGACTGATGAACCCATATGTATTTCAGTAGGACCCCCCTCCAACTCCCGCCCTGAGGTCTGGGTACACATCAGAGACCAGGATGCTCCATCTAGGCTTCCATCCAGCTCTAACACCATAATGACATGAGTGGCAGTTACCGTAGCGTTTGGCCATTCCTGGGAATGGGTCATTGAATTCCATATAACTGCCCACAATAACATAGGAAGTTTCAGTTCAGAGGTCTCAAGCCAGTCTGTCAGCTCTGAACTGTGATGCTTTCCTGACTGACTCTTCCAGACTTTCACCAGGACCTCCTTTGCTTGCTTCTTCTTCATGTTATAAATTATGATCTACTCACATTTAAATCAGTTTGTGGATAGAGCTATACAACCTATTCGAAAAGAAAACACTACGATCCCATTTAGACTTCTGTTTTCCTTTGAAAAAACTAACTGAATGTTGTAAATATGCTAAAGCCCAAGGAATCACTTGTCTTTGCCACAGTCTAAGTTGGAGTATAATTAAAGTCTTGACAGTCTCAGTGCCTGCTTTCCCATGTAGTGGGAAGCCAGGACAGCAGGAGGCCAGTGCTGCCTATGGGTCTATAAGTGGAAGGTAATTATATCCTAGCCTTATATATGGTGGCCCACCCAAGATTACATGGTAGGAGCCTCCAAGTGTTTTATGCTTACCCTCAGTGCCATCAGTGTGTGCTCTAAAAATAGTCATATGGTGATATCATCACACACACACACACACACCACCTTAAACTTTTCCTGTGGTCCCTTTTTTCCTTTGCCTACAAATATTCTTGTCAGTGATTTGGAAGAGGAAGGTGGAGAAGAACATGACTAAGCACCCCTGGTTTCTTGTCAGTTGGACATGGGGGGTAACACCCAACATTGTCCTCTCATTGTCCTTGGTCAGTGACCTTGATGTAGTCCCTCTTCTGTCCTTGTGCCCAGACACTGGCCTCATATCTTCTTAACCAACGTAGCATGCCACCGTTTTGACATGAGCCAGACAGTTAGACACAGGTATCTAACCATGACTATAAGATCCAAGGAACTTCATGAGACCCAGCACACATAAACTCTCAGTCCCCAGAGCTCTAGGCTCATTGGTTTTGTTTTGCTGCATTTTCTGAGACCATGGTGACCCTGGACCAAAAGCTGTCCAAAACTGTCCTTGAACTCCTGATCGATCCTCCTGATCCTCCTGCTCCCAATTCCAAAGTGCTGGGATTACAGACATGAGATGCTCTGCCTGGTACTCTCCACGCTCACTGGGAAGATCTTTCAGGGAGCTGCCTTTGGCTCAGTTGGGTCTCTTGCCAAGGAGAGCTGGCCTGCCCATCCTCAACTCAAGAAACTTGTTTTCAAAAAAAAAAAAAAAAAAAAAAAGAAACTTGTTTTCAGAAAGAATCAATACTCCATCTCGGCAGGTTTGCAGGCATTCTGAAGCCATGAATGGAGCCAAGCAGGAAAGCCATGGCTCCGATGAATGGGAATAAGGAGCAGCCACTCCCACATTAATTAATGCTGAATGGAGGAGCAAAGCTCTACTCTTGAAGACCCCGAGCTGAATCGCAAAGATTAGTGCTCTTGAAGGCTTACACCATCTGGATATAGAGTCATCGGTGGTGCATTTATTGTATCCTTGTGACTTCAGAGCCAACGTTGTCCTCTCAACGTTGTGTAGTCAGCTACATTCCGGGGATTTGCCCTTCCGTCCTTGGCAAAGTGAGGTGGACTGGAGGGAGCTGGAGGAGCGGGGAGTGGGCTCCAGAACAGGTTATATCCCCTGGACTCAGGAATATCACAGAGGCTGAAGGGGAGCATCAGTCCAGCCAGTCTGCTTTCCTCACGTGCCTAGTAGCCCCCGCCCCAGGGTCAGAATCCAAAGATGTAATGAGGCCTCTCATCTCACCATTCAGTAAGCCTGACACATGTGGATGCTAAGCTAGATCCCACAAAAGGACCCCTGCTTTTTATGGACATCCCTGATGGGACTAGGAAACACTGGAGTCTCTCTGAAGTGAGAAGAATTCCTCAATCTACAGTAACAGTGTATCAAAGCATGCGGTTTTCCTCTGAACACCCTGCGTCTGTCTTCCATCAACATTTCCATCCAGCATGATGTACTCTGAGAGGAGTGTCAGGTCTCAGGACACGGAGCCCTGGAGTCCTACAGTACAGGTCAAATTCCATTTTATCTAGATTACAAGGACTTCAAAACCCATTACAAGGTAACCCATGCCTGTAAGTCCAACATTCAGTAGTCAGGTTAATGAATTTGAGGCCATATAGTGAGTCCAAGTGAGTCCATCTTTAACTAGTCTGTCCCTGGGTCAAGGAAAACAAGGGCTGGTGATATGGCTTGGTGGTAGAGCACCTAGTATTCCTAGCACCACAGAAGGGAAATTGAAACAAATAAATATAAGAATTCTACCGAGCACCAGGCCACACTCCCCTTGTTAGTATTCTGAGGTTTCTTCCCAAACTTGCAATTTCCAGTGCCTACCCCAGGGCTCTGTCTATTCTTAGACTCTTAGCTGATTGATAAGGGGCCGCTGTGGTGCCCAAGACTTTTTCTCTTTCGGGCCTTCCCAGCACCCATCCAGCGTCTCGTGGCTGGAAGCCTGTGGAACGTTAGACAGCTCCCATTTCTACCCCAGATCAGCTAGGAGGGACGTGTGCCCTCCAAGGGTGTCCAAGAGCTAAAGCAGACACACTTCAGGACAGAGGTCAGCAAGAAGCCGGGAGCCATGGCTTCCTTCTCAGGACCCATTCCTCAGAGGAAAACTGAAGCTGGAGAAGACTAAAATCCAGACCGAAGGCAGTCTGACTGCAGGAGGCTGCTTCACAGCAGGCCGTCTGTGGCTCCATCTGAATCCTGGTTAGACAACGGAACATAAACGTACTTCCCTGAGATCGTTCCAGCCGCTCAGCGAGTCACATAAGCCCCTCTCTGAGGGAGCAGACATTTTTTATTCCGTGAGTCAGACACATGCGAAGGCAGTCTGACTGCAGGAGGCTGCTTCACAGCAGGCCGTCTGTGGCTCCATCTGAATCCTGGTTAGACAACGGAACATAAACGTACTTCCCTGAGATCGTTCCAGCCGCTCAGCGAGTCACATAAGCCCCTCTCTGAGGGAGCAGACATTTTTTATTCCGTGAGTCAGACACATGCCTCATCTGCTCCCTGCGGGGAGCCAAAATAGACTCTCTCAAAGTCATCATTTCATCTGCTACAAAATGCTCCTTGTAAGGGCTGTCCACTGGCCCTGGCCCAGCACCATTTTACCCACAAACATGAATGACCTGGGGAAGTCCAACTTAGCAACTCCTGACGTTATTTATATAGCACGAACAAACATGGGAGAAAGAAGAGAACCTCTAATTTCCTCTCTGGAAACCCTTTGCATCGTCCTCTTCCCTCCTCCACACGTGGTGGAGGACGCTCCAGGCTAGTCCGCTGGGGGATGGGACCCCAGGAACACTGAACACTGCAGCAGTGACTGCAGATGTGAGGAACAGTCATCCAGTGGCCACGACAGACAGTGAAAGAAAAAGAACGTCCTTGGGTATAGCCCCATTTGGACTCTTTCCTGTCTGTCCTTTTGTTTTTCCAATCCAGGGTCCCATGTACCTGGGTTGGCCTTAAACTCATTTAGGCAACTGAGGCTGACCATGAACTTCTGCTCTCCTTGCCTCCACCGCCTCAGTGCTGGCTTCACAGGCCACCAGGACTGGTTTTTATGGTACCAGGATCGAACCAGAGGCTTCCTGCATGCTAAGGAAGCACTCTAACAACTGGGCTACATAGACAGTTCTGTGTCATTTATCTTTTTTTGGTCCCCATCCCAGAAGTTGGCAATAATATTCTTGCTTTACCAAAGAGGGAACTTGGGCTGGGCATAAAGGAAGCCAGAGCTTCTGCCTCCACAGTTCCTTGGTCTCACAGGTCTTCCTTTACTAAATGTCCCAGCAGTGGTCCCAGGAGATGGGTGTGTTAGAATAGTTGCAGGTATAACACACATATAGCAGGTGGAGATGGCACTAGAGCCAGCCTGAGATCTTCTATCCTGGACCTGCATAATAGATGATTCTGGAAACCCCTCGGCTCCCCTCAGCAGCACAGTTCCCTTGTTAGTCCTAAACCAGATGTGTCACTCTTCAGGACATCTGTTCCCAATTTCTCTCAAGTGACAGCATGGGCCATCGTAAACAATCGGTCAAGGGAACTGCACCCGGCTTGTGTGAGCACCCCTGCAGCTAGCTCCCCTTCTACAAAGATCCCCAGAGATTTGCTTTACTGAGCTGCTGTCACATGCCTCTCTGAGAACCACCCACTCTCCATTCCAGTAACCTTCCATAGCCTTCCCTTTCCTGTTTGATTTGATCAATTTGAGGAGGATGGGATTGCTGCTCCTCTCCCAGACTAGAGTGCACATGTGTCACTAGGGTATACGTTTGACCTTCTCTGGGAACATGGCCTGTTTCTTTTTTTTTTTTTTTTCCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACACTGAGCCAAATCCCCAACCCCACATGGCCTGTTTCTTGGTGACTCTTCTCTGTAATTGCTGCCTCACCCTTTCACTTTTTATCTTCTTCTTTTTCTGTATTCAGACTTTTTTAAAAAATAATAATGTGATCTTAAAATTAATCTGTTGTAATAGTTTTATACTAGTTAAAAAAAAAAATAACCGAGGAAATGAATCTAGAAAGGATTGTTTAGCTTAAAGTTTGGAAGGTTCAAAGCTCTGGTGTCCAAGGGCAGAAGGTGGTAGCACATCTGTGTGGGGACATGCATAGGGACAAGCACACTGAAACCAGGAAGCAGAGAGAGAAAGGAAGAGACTATGGTCCTGAAAGCCCCTTTGAGGGCATGTCCCCAGTCATGTAAGAGGCTACACCTCTGAACAAATCATAGTGTCCCAATAGCGCCCCCAGAGGAAAGACAATCTTACTACATGGGCACTTGTCAGACTCGTAATAAATCTGGAGAAAGATTCCATGTGGGAGTGGGCAGAGAGCCAGTGGGTACTCAGGAAGGCCCCTGAGTATTACAAAGCTTATTTTTCTTGGGCTGATTGAATGCCAGACACTGGGCTGTCATATCAATTCATTGACACCACAGTACCCCATGCATTAAGTTATGTCATTGCCACACTGCCACACAGGATCAAGGCATGGTGAAATGCCTGACATCCTTGCCTGGAAGTTACTGTCTTCAATTCGGCCTTCCATTCTCTCATTTCCTTCCTCAGTCCTCTCCCTGCCATGCTTGGCCTCGGCTGCCTTGAGGCCAAATCACCAGCTAGGAAGCTGTTTGCAGGCAGCCATGGTCCCAGACACTAACAGTTGGCTCTGTTTCTGGCTGCCAG
Seq C2 exon
GCACTACCACAGCATGGAAGTATTCACTTACTATGACCTCCTGAGCCTCAACGGCACCAAGGTGGCTGAGGGCCACAAGGCCAGCTTCTGCTTGGAGGACACTGAGTGTGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758:ENSRNOT00000058663:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
A:
NA
C2:
PF0118612=Lysyl_oxidase=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]