GgaINT0136514 @ galGal4
Intron Retention
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4735327-4738170:+
Coord C1 exon
chr23:4735327-4735443
Coord A exon
chr23:4735444-4738056
Coord C2 exon
chr23:4738057-4738170
Length
2613 bp
Sequences
Splice sites
5' ss Seq
ACGGTATTT
5' ss Score
5.46
3' ss Seq
TGGGCTGCCTCTCTCTGCAGTGG
3' ss Score
9.34
Exon sequences
Seq C1 exon
CACCCTGTGGTGGTCAGTATACGGGCTCAGACGGTGTAGTCCTCTCTCCAAATTATCCCCAGAATTACACCAGTGGACAAGTCTGCTTGTACTTCATCGTCGTGCCGAAGGACTACG
Seq A exon
GTATTTTTCTTTCTTGACAGATTTTCAGACACCTGATTTTGTTCTGATGAAGCAGTGGAATAGATGCATATGTAAATAGATGTAAGGGAAATTGGAAGATGGCACTGTTGCATGCTAATTGTGCTTTGAGGTCATTGAAGCTTATGGAAATTTTCTGAATTTCAGAATTATCAAAAATGAGGAAAAAAAAAACAAATCTAACAAAAGCCATGGTGTTGTCACTCCCATTCCAGTTCCTGTGCTATATCCAATTGTGCAGAGTTGAAAAATCAGCAAGAAGTAATTCATGGTGCTTAATACTAACAGCAGACTCTGAGAGTACAAAATGTATTTGCCATAAATGCATCCTAACCGAGGTTCTAAATAATCTGTCTGCATGAAGAAGCACGTGCATGTGTAATTTTGTTGACATGAAGCTATATGACTTACAGGTAATACTGTGTAAATCAAATTGTATTGCTTGAGCAATTCCAGGTGTGTTTTGAAGATTCTGACAACCTCGTTCAATGATTAGGACTGAACTAGCTCCTGTCTGGTGTCATATGGTACCTATGGTCAGCTAATAGAAAAGCTGTCAAAACTGGAATAGTGGCTTCCCCAGGCTGAGAGAGGGCAGGCACTTGTATTGTTTATTATAACTTGCTTACAAGAGTAAAGTTTTCTTATAGATGTTATTTTTCTTGTATGTTCATCATGACGTGTGCATGATATGCTTGTAAATGAATATGGTACAGTTACAGATTAAAGGAAAGCACCTTTTAAGAGAGGAAAGGGAAAGCTTGCTGGTAAATGAAGTTCTGACAGCACTAAATCTATGTTTTGGTAGCGTGCTGGAATGAGCTGATATTCTGTATCTATTTGCTCATTCAGTCTGTCTACTGAATTGAGACATAAATGCACATTAAAGTCAGAGTCATTTAAATGGATCATCATTCTTTTAATAGACTCCAGTGCCACTTAATTTTGGTCAGTTAGGATAAAAGCATGGTGGACATTGCAGGAACATTTGAGGCAGGTAGCTTGATGGGTATTAGTATTGGTTAACATATTTTCTTATTAGAAAGGAATTCAAAGCTCTGTAAGAGCACTTGCACTGACAGCTCTGGCAGATGAAGGTCTCTAAATTCTGTTATTTGATACAGTTTCTCAGTGCATCATATTGATCTTGTTCTAGACAGTCCCTGTGGCCTTTTCAGTTGTTTATGATTTCCCTTGCTAAGATAGCAAGATGTGAAATAAGGATGCCGTTCAGTTCAGTTATAAGCTCCCTTCACTTGAATTGCCCTTCTGCCCAAATGGATCTGGGTTACATCTAAGTTCTTGACGCTAACTGATGAAATACTACACTGTACTCACACTTCTTAACCTGCTTTACTGCAGCTGATCTTGATACTGCCTTAAGAAACACAGTATCTAATGGGCTAGACAGTCTTGGTCTGCAAGTGTGACTTCTGCCAACTACAGGATGACAGCTAAATTAGTTTTTTTTCTCCACCCGTTACCTTTCAGTGCCTTCATTGAAAGCAGCCAGGAAAACCATTAGTGGTAAATGTTATGCATTTCCCATCTCCTTCACTTTGCTGGTTCTGCGGACAGCAGGCATCAGAGTGTGCTGTCGTCACTTTTTGAGTGTTCCTAGCATCAAAGCTGTGCTGGAAACCTGAATATGCAGGAAACAAATGTTATAGCTTGGTGAATGATGAATTTCACAGCAAGAGACCTCTCAGCTTGTGAACCTGCAACTGGGCTCTTACAACTTGAAAATGCAAAGGGAGGAGAGAAAGGCGGGGTAGGGGGTGAGACTTCTATGGGCAGATTTGGGAGGAAAAGAACCTGTTATTTTATTCTGAAAAATGAAGATAAATAACTGAAGTCTTCTGCGCTAGTTAAGCAAACAAACAAACAACCCTCTGATCCTCTCATTATTTTTTCCTCCTATTTTATAACTCTGCATGCCCGCCGGCGCACTGACAGTGTGTGCAGTGAGACCCAGAGCACTGAGTGGCCTTATTAGCAGTCTCCATAGACAGGCCTAGGACTGGCTGTTTGTAAAACTGTGAGCGTCCTCCTCCCTTACAGTGGTCCTCCCTGGCCACAGTGGCACAATCTAGAAATTAATTCCTTCAGAGCAGAGACTGCTCTTTTGTTCAGGCTTTGTACAATACCTAATGCAGTGGGGGCCCAGTTCACAACAGAGGCTCAATATAAATAATAAATAATTATCCGTTGGTGAAATTATATACCTTGTGTTACGTAGGCAGGCAAATGGGATGATTCATAAAGCAGTCCCTTTTGGCCTATGAATCAGTGTTAGAGCATACTGGCAGACAAACACGGGGGAGGCTGGTTGCTGCTTCTGTTATGCCGACTTTGTGGATAAATAGAGGGCTCCCATCTTCCGGGGCTGTCAGTCAGGTCCTTGTTATCCTTGCCAGTTTCCTGAAATAAAAGCGCCTGAAATGCCTCAGCTCAGGGCCTGGCAGCGTAGGCCACAACTTGGCCTGGCTGTGTAGGCCTCAACTCGGGGCCTGGCCACGTAGGCCTCGGCTCAGGGCCCGGCTGTGTAGGCCGCAGCATGGCCCGGCCTGCCTGATGGGCTGCCTCTCTCTGCAG
Seq C2 exon
TGGTCTTCGGGCAGTTTGCCTTCTTCCAGACTGCGCTCAACGACATCATCGAGGTTCACGATGGCCCCAACGAGCACTCCCGGCTGCTCAGCTCCCTCTCAGGCTCTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602:ENSGALT00000004092:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
NA
C2:
PF0043115=CUB=FE(35.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]