GgaINT0136544 @ galGal4
Intron Retention
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4789553-4792076:+
Coord C1 exon
chr23:4789553-4789726
Coord A exon
chr23:4789727-4792002
Coord C2 exon
chr23:4792003-4792076
Length
2276 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TGCCTCTGCTCTGCCCCCAGACC
3' ss Score
11.16
Exon sequences
Seq C1 exon
CCGTGTTCTGCGGAGATCCAGGGATCCCTGCCCAGGGCCGGCGGGAGGACCGAGGCTTCACGTACCGCTCCTCTGTGTCCTTCTCCTGCCTGGCCCCACTGGTGCTGGTGGGCTCAGCACGCCGCTTCTGCCAGTCTGATGGTACGTGGAGTGGAACCCAGCCCAGCTGCATAG
Seq A exon
GTAAGGGCACCTCCTCTGGCCTGCGCCTGCAAGCGGAGCACTGTTGGTCTGCATTTTCATGTGCAGAAAAGTGGGTTGGTTTGCTGCTGTTGTTGTCTTTCATTTCTGGGTTTTAGGTCCCATTTCTGGGCCTGAGCGTGCAATTGACTGCACTTCTGCCCAAATGTGCACGTGAGAGCTCCTATGTTCTCTGCTGCATTTGAATTCTTTCCAGAATGGCAGAGCAGCACTCCTAGAACATGAAGGTGATGTACACAGAGGACGAAGTCCTACAGATTGCTCTGCCTAGCTGTGATGTTGGTATTCAGGTTGAAATCTCCAGACATGCTTCATGTGACTTGTTTCCTGGGGCTTCCAGAACCCTTTGAAGCCTCGGAGAGGTCTATAATGATAATTAGTCATGGTGTTCTGCGCCGATTTAAAACTCTGGCTGCAGCCTTGAACTCCTGGGCTCCGTGGTGACAAAACTGCTCAGGCTCTGTGCTGCTTTCCTTCGCCATTTGCCACCACCACCACCGTGCTACCTGCCCTCACACTGACCTCAGTCATTCTGGCTTGTTAGCTGCATCTTACATATGTCCCTGATTCTGTTAACATAAAATCCTTGTGGCCTGAATGTCAGCCTTCTAGTTCCATGCTGGTGTCCCCATGGTCTTCTCACCTGCAAGCAGCTGAGAGCTCTGCCTCCTAATGTGAATTTTGGCTTTAAATGCCCATGCCGGATTTCTCTCTAAGGCCTCATCCAGGCATTCATCCCTCGTCCAGGAGCCCGTCCTCCATTCATGGCACTGCAGACCCATGCACGAAGCTGCAGTGGTGCAATGCGGCCAGCAGCAATTCCTGTCCAGACCGTGGGAAGGGGAACGTGTGTGTCTACAAAGCCTGCCCTGAGTGCAGGCAGCTGAACCCAGAGGTTCAGAGGGTTCTGTTCAGTTGGATCTCATCTATTTGTGAAGCACACAGATGGGCAGAGCGCCGGCTGCAGTCAGGAGACAGAGCTGTGCCCTCTGCCCTGCACCATCCATCCCCTCCACCTCCACCAGCCCCTGGGGCTCTTCATCATTTATCACAGACACTGACTTACCTGGGGGCTTCCATGGAAACCGCTTCAGTGATGAATGACAAAAGCTCAGCAGAGCTGAATGATGGAAAATGACTTTGCTTGTGCTGCAGCCCCACGTGGGCCACGTTGTGGGTCCCTTGTTCAGTGACTCAGCAGTGCTCTGAGGACACAGGGAGAGCACCACGAAGTGTGTAATGCTTCGGTGGGAGCAGATGGGTCGGTTGGATAGGGAGGAATAAAGGCATAGCAACAAAGGGCCAAGCTGTTAGGTACAGAGGTTGTGCTCGTTCCTCTGGAGCTGCAGCCAGGAGTGACAGGCTGCCTCTGCTCCCACTCTGTCCTGGATTTTTCTTACAGGATTTATGTCTGGATTGGCGTAATCCTGTTAATTGGAGTGCTTTGACTGAGTATAGAGAGGTGCTGGCTGTGGGACTGTGGTCCTTCTCATGGTGTGATGAAGGAAGGAGGCTGGGAATGAGACTGGAATGTGACTGCACAACGCTCCAGGTGCTGCTAGGAGAGCTGTCCCTTCACTGCGTATCAGAGCATCCCCTGGGGGCAGTGGGGCTCTGTGCTGTGATCCCAAGGAGCAGGGATCCTGCTGCTGCTGCTGAATTGCCTTTCACACCCAGCCTTCAGTTCCTTTGCTCAGTTTGAGATGCTGATAATAGCATAATGCATCTCTGCCTTGATCCCATTGGTGTGCTGCTCCTGCCAACATGCTGGGAAAAAAGAAAAGAGAGATGCTAGAAGAGTAGCAGCAGGTATTGCTAGTGAGTTGTGTGTGTTCATCTTCTGGTAGAGACCCAATGAGGCATTAAGGGAGATGATGCATCTGAGATGCATTAGAACACCCAGCCCCTACCTGTGGGTAAAGCAGCAGGGTTCCATAGTGGGGGCTGTGGGGCAGGGCTGCCTGCAGGGAAGGGCACAGTGCTGTGTGCTCCTGGCATGGGCAGAGCAGCGTCTCCAAGACAAGGTCTGCATTCTTACGTTTTCTCCTGGGTGTCTGAGTGCATCTGGTTGGGTTGCACTGCAGCTGCTGGGGGTTTACAAAACAAAAATGTCCATGTATTTTCCCTTATTGCTGTGTGTTCCTGCTGGAGCAAAGTATTTCTGCTGCCTTGCAAAGGCACAGCGCGGTGCCGGGGCAGAGCTCCGGTGTGGCTTCCAGAGCTGCTCCCTTATTGCACTGCCTCTGCTCTGCCCCCAG
Seq C2 exon
ACCCAACCCTGACGACGTGTGCAGACCCCGGCGTGCCGCTCTATGGGATGCAGAACAACTCGCAGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602:ENSGALT00000004092:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=PU(32.7=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]