GgaINT0136766 @ galGal3
Intron Retention
Gene
ENSGALG00000002514 | Q91017_CHICK
Description
NA
Coordinates
chr23:4718618-4721777:+
Coord C1 exon
chr23:4718618-4718739
Coord A exon
chr23:4718740-4721335
Coord C2 exon
chr23:4721336-4721777
Length
2596 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TGTTAATTCTGTTCCAATAGCGT
3' ss Score
6.67
Exon sequences
Seq C1 exon
ATCCTTATGCTTCTGCAGCCCAGAAATTTCCACCTCTTGGGGGTGGAGGCGGCATAGGTTATGAAGCTAATCCAGGAGTTGGCCAAGCAGCCATGAGTGGTTCTATGATGGGAAGTGACATG
Seq A exon
GTAATGTATCCTGTGATGGCTTTAGTTTAGCACAAGAGAAAAGTTGCAGTTGGAAATGAAGTTCTGTGTTCGGTTGTGTAAATTTCACTGTTAACTGCTGACTTTCTTGTCAGGTGTTTAACATGGAAGAGTAGTTTGGCATTATGTAGTACTAGTTTAGTTAACCATTGCGGTAGTTTACGCAGTTGGAAGTTGTTTGTAACTGAATTCAAATGTGCTGTTAAGCATATTTGCAATTAACTCTGACCTTATTGGACGTGAGAAATTCTGCATCACAGTTAGGCTTGGAAGGATTTTTATAAATTCTAGAGATTATGATGATTTTCAGAATTAAAATAACAGTAGTAGCTGTTGAGTAACGTGACATTCTGTATGGGCAAGTGAGATCATTGTTCTCCTTTCCACAGTTGAACGTTGCATTTATTTTGGCCCTTCCAAGCCTTGTTAGAATTGATGCATGCTGTTAAGAGATATGCTGTTAATTCAGAAATCTGCGAACGTCTCTTTAAGCAGCAGATTAACTTAAATGATGGGGAACAGCGTATCACTTACTCTATATGCTGATGTTTGCTATAGAAAAGCAGAAATGCTATTTTTTGGTTTTTTTTCCTCAAGTCTTAGGCATGTTCCAGTGGTCTGACTGTAGCCATTTTGTGGTTCCTGATCCACAGGGAATGAAATGATAGCCTGTTCTTGTTGCTTTCTCTTTGTTGGGGATGACTGTAGGTAGAGTTTATTAAAGCTGCTGCATATCTCGTGCTCCGAGGTATGATTCCAAGCTGTACTATTTTTGGCACACTATATGTGTGAATGGGCTTTGAGCGTGCTTGGTGTTATCACACTGAAGCAATGCTGATACAGGTTAAAGAAATGCTTACTGGGTATAATGGAAAGCTGTTGGTTTAGGTGGTGATACTAGCGTGCTTTCACCCTCCTTGTAAGGGGTGTACTGTGTTGCACAAGCTGAACTAAGTGATTTTTTGGGTGGGTTTAGGCCTCTGGCTTAACTCTGTGAGCTACCATAATAGCTTATCAAATATCTTCTGTTTTTATGGGAACTGTGTCTTTGAAACCATAACTTTGCAGAGCCGCAACGATTCAGTAGACAGTGCTGGTGGCCTTAATGTGTCTATAGTCTACTGATATATTTAGGCAGTTCTTGAGCTTCCAGCAAATAGTTAGGCAGTCTGTGGTAAATGCTGTGAACATTTTTCTCCTCTGGAAATTCGTGGTACAGGTGCATGCTGAACGAGTGTAATACTTGAAAACGTGTGACAGTAAGATGGCCTTGAGTTTCTTAGAATGGGGGATCTCTGCCACACAGTGCTGTCACAGTTATTGGGCTGACATCTTTATGAGGAGGAGGAGGTAGACTTAAGCTGCCATGAACTAGGCAGGAAAAAAAATTGGTAGCATTTGACATGCCTTACTTGGGAGGATTGAAACTGACTTTCTGAATTGGGGTCTGAGTTTTCAGTTGCAGGTACCTTTTGTAACAAACAGCCCACCATTGTTCTGTTACTTGGTAGCAGAAAACGTGCTTGAAATGAAAGTTGATAGCTTTTTGTTAAAAATTTGGCAGTTCTGTACATTGAATGCTGATCACAACTACTGTTACAGGAGCTGAATGAAGTACATGCAATGAGAAGTACTAGCAAAAATATCTGAAGTCTCTGCTTTATTGCAGGGTGACTTAGCTTTTACATCTTGGTGTGAAACCTTTCAACACTGAAGTTGTGAATTTTTCCAAGAGCTTGTGATGAAGGTGGGGTGGGAAGGGATACATTGACTGGATGCACACAGCCCTTTGTGCATAGTTCTAACCTGAAACGGAATAAGTTGTGGTTCTCTGAACACACATTGCATATACAGCAGCAGTTTCGGAGTATGTGGGATTGAATAAAAGCAAGTCTTTTGGTGGAGCAATTGCGTTGGTTAGGTAAATCACTGGTCATGAGCTTTTTCACATTTTTTTTTCTTCTTGTAATCCAGTAGTGCTCACTATCAGTTTTGATTACTGCCTAAGGCCTCTACAGTTTAGTCAGCAGACCGTAGTCTTAACCCCATCTTGAAAAGCACATGGTCTCTATTGCAGCACATGCCATTAACTGGTGAGTAGGCATTCTGTTTACAGTGACATTTCATGAATGTCAGCTCGTACTTCAGTGAACTGAAGAAGCTCTCTCTGGCTAGGCTTGTTTGGAAATGACAGTGATGTAATCTAAGCTTTTATCACACTAAAGGTGAGAAGTTTGCAAGCTATTTGCATTAACTTGGTTGAAAATTGCTAGAGCTCATTGTGAAAAGTTGTTAATTCACATCTGCACTAATGCTTACATTTCTAGCACTGCAGGGAGGATCTGTTCTTTGTAACAGATGTATGAGAATGCATCAAGTGGGAACATACCTCAAGGCATGTATTACAATAAACTAATTTTTAAATTACCCTTTTTTCCTTTCTATGTTCCCGGTACCTGTGGATCGGCTCAATGGTGATTGTATCGACGAACCTTGACTACGGAACCTTCTAAAAATATATACTTAACACACATGGACATCAACTACATATAATGAACTGTTAATTCTGTTCCAATAG
Seq C2 exon
CGTCCTGAACGCTTTGGGCAGGGAGGTGCGGGGCCTGTGGGTGGCCAGGGTCCTAGAGGAATGGGGCCTGGAACACCAACAGGATATGGTAGAGGGAGAGAAGAATACGAAGGCCCAAACAAAAAGCCCCGATTTTAGATGTGACCTGTAGTTTCATTCCAGTTTGTTTTGTCTGTCTTGTTTAGACACCAACTTTTTAATTCTTGCATTTTAGTAAGAAAGCTACGTTTTTATGGATGTTAGAAACTTACTGACCTAATATTTGTAAGTGGTCTGTTTGGGCAAGTACAACTTAATTATGTAATGCAGTGTTTCAAAACAAGTTTAGCTGTTTTTTGATGTATAACGTCCCTAACTTGATGGCAGTGTACATTGTGCCACTGAATTCCCAAAGTGTACCAACTTTTTTTTACTGTGCTTCAAATAAATAGAAAACTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002514:ENSGALT00000003963:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]