GgaINT0137480 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4688338-4691434:-
Coord C1 exon
chr23:4691264-4691434
Coord A exon
chr23:4688417-4691263
Coord C2 exon
chr23:4688338-4688416
Length
2847 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCCTTTCCTTTTGTTTTAGGAG
3' ss Score
11.63
Exon sequences
Seq C1 exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
Seq A exon
GTAAGTTTCCCATTGCATTTCTCATTTTGGTCTGACAACTGACCGCATAAGCTGGACATAAGTTCAGCATTTTATTTGGTTTGTTGACCGAAATTTAACTTGAAGAACGTAGTTTAGTAGAAGGATTTCTCCCTCTTATTCTGCCATGAAACCCAAACCCCCAACTTTTTGATATCATGTTTCCATGTCGCTGAGTTTTCATGCTTTTCAGCTAGAGACAAAGCAAACTGCTGTAAAACTTGCATTATTAAATCTGTGGCAATATAGGCACTTCATCTCTACTAGATCTCACTAGAAAAGAAGTCATGTCTCATTGAGTATTTTGTGAATTGTCACAGTTAGAGCTGCGTAGTTTAAGCAGTGCTGTTCCTGCTACTTCCCTCTTTAAGATTGGTGTTTTGAGCACAGTGCTTCTTTGTTTTATTTTTATAAACATTTATACTTAGAGGTCTTACCTTACAAAAAATATTTGAATACAGACAGCTCAGTGAAGTCAAGTGGCTTTGTCCTTCGAGGCTGACATCTTGTATGATGGTATAGGTAAGAGTTCAATAATTGCAAAATGGAGGAAGTCAGAACTATTGGATTGCCAGGGTTGCTGAGCTCTCACCTGTCTGTTTGCCACTGGCTTGCAATGTTATACCAAGGAGATGATCCATGTTGCAATTCTTGTCTCTTGAGTGCTGATATTTGGGTTGTGTGCCAAACTTTACACACATTAAAGGTGCTCAAAACTTCCCAAGGCGACTCATCCCACTTCCAGTAGTTTCGGTGTTCTAGTTCAGGCATTAGTTTTTCTAGTCTCATTCTGTATACTTTTGCTATTCCTCATCTTATTTCTAGCCCGTCTTTCCAGCATTTTTCCTTCTCTTCCCATGATACTGTTGGGTAAATAAAATAAAGAAGTTCACTGAGTGTTTGAAACTCTTTAGATTTCACTGCCCTTCTGATTTGTTCTGTTCTTGGAGATTCATATCTAACCATGTGTAGATTAGTTAAATCTGTTTCCTCTTTTGTCATCCCCAAATGGCACCTGCTGTATGGATTTGTGGGATGTAATGCAAGATGCTTGTGGTTATCAAAGGTTATATTAATGAGGAAATTTGAAGACCTGAACAATTTGAAGTATCTTATTGATAAAATATTAATTCCTGGGGTAAAATTCTGTAATGATCAACGTTGCCTGATACTGGAAAAGTGTGAGAACTGATGATGGTTCATTTTGGTTTGCTTTAAATCAAAAGTAATGTGTTTTACATCTCTCTTTCCTGTGCATTCTAAAAGAGAAGAGTATTCCTTGCTGTAATTGGTAGTTGGAGCTGGAAGTTCACTGCTTCCAACAGTTACACTGCCATGAAACTGTGCTTCATCTTGCAGAGCTGATATTGGGATTTGCTTCAATCTCCATTACCAGTATTGATTTAAAATGCTGAAAAATACACATTCCGGTAAAGAACTAGTTTTTAAATTGTAATATTAAAATAAAAGCAACCACGGTACTTTAAAACCCATCATCATGGCGTGCTCATACACAGCTTAAAACCTCCCTTCCTTGCAATGTGAGTTCTTGTCTGCTCGTTCAGGTGGGGAGATAACGCTGCTGGGTGCTCTCCAGGGAAGCCTGTTGAGAAATAGCTTGGTTGTCCTTGTGCAGAAAGTTGTGATTTTGCCACGGGAGCGTTAACTTACTCTGTGTGCATGGCAGGCTGTGATTTTTTGGAGGTGGATTAAGCTGAGGGAGCAGTTTGCTGCTGCTGAAAAGTGAGAGCTTATTTTTGCCCAGTGATTTCGGATTGGCTTACCTTGCAGTCAGACAGCAACTGCTAATTTAGCTCAGTCATAATATGACATCATGGCCTCGCTATTCTCAAATGACTGTAAGTAGGTTAAATCTTATCATCCTTGTGGCTCCAAGAGATTATTCTTTTCAGCCTATTAAGATTCACATGTAGAGTGTTACAAGCTGCTTTACGGTTTGAATTTCTAGGAAAAGCATGGGCAAGAGGCATGGTGTCAAAGTCTGAATAGCTGCCGTGAGGTAAGCTAGTAATTTGTAGGATGTCAGCTATTCCACAAGCAACTGTCTGCAGGGATTTTCTCATCCTGTACAAAATGCAAGGTTATTCCCCGTCCACTGAAGTCAGTCGAAGTGTGGATTGCAATGGTCTGCCTGCTGCCAGCATCACACCACTGCTTTGTGAAGCTACACTGACTAAGAAAATCTAAAAGATTGCAATAAAAAGAGGTTTTTTTTTTTTGATTCGTCATCCCTCAATCAGGTCCTGGTTCAGGATGGGGCAGAATGTGGTTGTCTCAGCTTAAGGTTTCTTAATGTGCTGTCAAGCTTCACCTTGGACTCCTCCCAGGTCGTTCCCCTCAGAGTTCAGCACAGAGCACTTCTCACCAGCTAGGGCTTGGTTTCTGTTCTGTTATTGTCATCTATGAATTGGAAAATAGAGCTTGTTTCCAAGAGTAAGGGTAAGGACTGCAGAGCATTTCTGGTTGGAAAGTTTGTGTAAATGGAATGCGAATATTTATCTTAACACGTTGATGCTGAATTCTAAGGTGCATTGGGATACAGGTGGGAAAGGGAAGACAGCAGGCATCACGCTTCTGAGTTCTGCGTGATGCTCTCAGTTGTACACTTTGCTATGAACCTCTGTGTCGGCTCTTTGTGTGGTACTTGTATGGTACAGCTGTGAGCCTGGCCTTTGAGACAGGCTGAAGAGGTTCTTTCTTGCCTTCCCGGGCCTTAAGATTCAATACAGCATTATAAAAGAATGGAAATCATGCAACCTGTTATTACATGTGTGTATTTGTTCTCCTTTTCCTTTCCTTTTGTTTTAG
Seq C2 exon
GAGTACGGCCAACAGCCAAAAACTCAGGAAGGGGAGCTGAAAATCAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]