GgaINT0137491 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4679958-4680441:-
Coord C1 exon
chr23:4680292-4680441
Coord A exon
chr23:4679996-4680291
Coord C2 exon
chr23:4679958-4679995
Length
296 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
GTTGCTTTTTTTCTCCACAGGTG
3' ss Score
12.52
Exon sequences
Seq C1 exon
TCCATCCAGCAAACCCTTCTACAGCACCAGCTTCCTCATCAGGCCCACCTTCTTTGAGGAAGGACTCAACCCCAGTCATAGCAAATGTGGTGTCCCTTGCGAGCACCCCTGCTGCCCAGCCTACGGTTAACTCCAACAATGTTTTACAGG
Seq A exon
GTAGGGGACTGTTGAAGATGATTTCTCTATTTTTAAATCTCTATTCCTGGACATTTGTATTTGTTCCGGAGTCTTTTCCACTGAGATCAACAGTTTCTTCATTGTGCTTCACATCATTGCTGAGGGTTGCTGTCTTGTCCTTCCTTTACCTAAGTATAAATAATGATGTATATCTGTTCAGTTGTAATGGGGAATGAGGTTTAAAGGGAATTCTTTTTCCCGACCTGGCAGAGTATGGGTTGTGGTCCTTGATAAGTGCACAGACTAACCCAGTATGTTGCTTTTTTTCTCCACAG
Seq C2 exon
GTGCAGTCCCTACCGTGACAGCAAAAATAATAGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCAGCAAACCCTTCTAC
R:
ATCTCCTATTATTTTTGCTGTCACGG
Band lengths:
188-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]