GgaINT0137491 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4310358-4310832:-
Coord C1 exon
chr23:4310692-4310832
Coord A exon
chr23:4310396-4310691
Coord C2 exon
chr23:4310358-4310395
Length
296 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
GTTGCTTTTTTTCTCCACAGGTG
3' ss Score
12.52
Exon sequences
Seq C1 exon
CAAACCCTTCTACAGCACCAGCTTCCTCATCAGGCCCACCTTCTTTGAGGAAGGACTCAACCCCAGTCATAGCAAATGTGGTGTCCCTTGCGAGCACCCCTGCTGCCCAGCCTACGGTTAACTCCAACAATGTTTTACAGG
Seq A exon
GTAGGGGACTGTTGAAGATGATTTCTCTATTTTTAAATCTCTATTCCTGGACATTTGTATTTGTTCCGGAGTCTTTTCCACTGAGATCAACAGTTTCTTCATTGTGCTTCACATCATTGCTGAGGGTTGCTGTCTTGTCCTTCCTTTACCTAAGTATAAATAATGATGTATATCTGTTCAGTTGTAATGGGGAATGAGGTTTAAAGGGAATTCTTTTTCCCGACCTGGCAGAGTATGGGTTGTGGTCCTTGATAAGTGCACAGACTAACCCAGTATGTTGCTTTTTTTCTCCACAG
Seq C2 exon
GTGCAGTCCCTACCGTGACAGCAAAAATAATAGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTTCTACAGCACCAGC
R:
TCTCCTATTATTTTTGCTGTCACGGT
Band lengths:
177-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]