GgaINT0138365 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5325969-5330273:-
Coord C1 exon
chr24:5330097-5330273
Coord A exon
chr24:5326169-5330096
Coord C2 exon
chr24:5325969-5326168
Length
3928 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AGCCGTGCTCCATCCCGCAGTCC
3' ss Score
8.35
Exon sequences
Seq C1 exon
GCAGTGGGAACCCCCAGCAGTACCACCCCATCCCGCTGACGGGCCGCATCCAGATCCTCCCCAACAGCTCACTGCTCATCCGCCACGTGCTGGAGGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAACGGGGTGGGCACGGACATCAGCAAGTCCATGTTCCTCACCGTGAAGA
Seq A exon
GTAAGTAGCCACGGCATGGCTGGCATGGAGCTGGGGGTGGGCTGAGATGGACAGACAGACGAAAAACAGATGGACAGATGGGTGGATGGGGAATTACAGCCTGCAGCATGCAGAGAGCAGCCCGGTGCATCCCCGGCACCACGCAGCCCTGGATCATTGCGGGCATGGAGGGCATTGATTCCCCTCCTACAGGGGAGACTTCCCTTATGCTATTAAAAACACTTAGTCCTTAATAAAACCTGGCGATCAATCTACATCATACGGCAGGAAAGGAAATAGCTCTGCTAATTTGACAGGGCTGGGCCGGGAAGTGTTGTTAGACACCGTGTTTGAACTGCGCTTATTATTGGATTCCTCTCCCGTTGCTATCAGCAGAATACATAATCTCCAGCGCCTCTCTATTTATTTCGATTGTGGCTGCCGTAAGAGTTCAAACCCTCAGAAGAGGTGCAGGAGGGAGAACTCCCTCATGGCAGTGGGGCTGGCATGCAGCATGCTGCGCCCCCCACCTGTCCTGCACCCCAGTTTGGCTCCCGCTGGCCCCCAGCACCCCCTGCTTGTCTTATTGCTGCCTTCCTAGCTTCCCCCCATCCCTAGCCAGCTTCTCGTGGGGAGGGCCGAGGGCAGCCTTTCCCCTCCCTGTCAGCTGTTTAATTTATCCCGCTGATTGATGAACTGAAACGAGCGACTTCAAACAACCCACTTCAATGAGGCGCAGGTACAAAGTCAAGGCGATTAATCCCGAGTGAGAGTGCTGAAGTCTTGGAGCCTGAACTGTTGCCGTGTCCCTGCTATCTGGTATAATTGCATCCCAGGACAGGTTGCTTGCTGACTTGAATAGCACATAACCTTATTATGCATGTGCTTTTACATTTCCCAGAGACCTCAGCAGCCTTTGAAAAGGTTCGAATGAATAGGTAGACGAAGCACCGCAGCCAATTAAGCATTATATGGGGCTCTTTGTTTTGTTTCATTTTTTGATTTTTGTTTGTTTAGTGAAATGTCAGGCCAATTAAAGCCAGATCAGCGCCGGCTTGCGCTTCAGGCCAGGCCACTGCGGATAGAGTTAAGTGGGAGTTAAGCAGAGCCCAAGCCACGGGATGGGAGGTGCAGCACCATCCCTGGCTGACCGAGGCGATAAATCAGAGCAGCAGGAGCAGCCCCACTGATGCCAGGAGGAGTTAGCTGCTGCTTTGTCAGGTGGTGGCAAACCTGAGTGCAAATGGAACCGCGGTGGTGCTGTTCCCAGCTGGGGCACCGCAGGGAGCACAGTGCCCAGGGCGTGTGCTGGCACTGGGACCTCGCTGCCACGTCGCTCTGCTCAGCCCTGAGCACAGCACCTGTCTGAACACAGCAGTTTCCCACTGCTGTGCAGGGTTGGGGGCGTTCATCCGTGCTTTCCAGAGCAACTTGTTAGCATCAGGTCCAGCGCGCTGCAGAGCGAGAGGTGTGGGCTGCTGGAGGCTGTGAGCGTGCAGCCGGGGGGCTGGCACAGGTGCAGGTGAGGAGCTCGTGAGTACGTGCTAAATGGCATTTAGCACCTGCCTGCACACTGCCCTGTGCTCCAGAGCAGAGCATGAGGGCTGTTCAAGTCCCCCAGGGCAGTGTTGGTGGTGGGGGCTCACCGGGCAGGGCCAGAGGTGCCAGGAGGTTCGGTGTCCTCCTGCAGGAGCATCACTGATTGCTTCCATGCAATTTGAATTAATCTCATGCTTCAGGTGGAACTCAGCTAATCAGTGTAGAAAGGAAGCTGAAACGGGTGCAATCAAATTAACATCACAGAGCTGGCTCTAAACAAGAAAGAGGGGGGAGAGGAAGGCGGGTGCAGCCCTTGTCACCGCTGTCACCGTTCTCATTCAGTTGTCACTGCTGGGCTGTGCAGCTGCTCCTGCCCCAGCGTGGCTGGGGATGGCACGCGGGGCACTGACAGCTCCCTTTGTGGACAGCCTTATCTCTGCCCAGCAAACGGGATGTGGCTCTTGTCGGAGCTGTGTTAACAGGAGCTCTGGCGTGCAGGAGCCTGCCCTGTGCAGGAGGCTGCTGACGGCTGCAGGAGTTCTGGCCACGTGCATCCTCCTTCCCTCAGCCACCGTGGGCATCGCCAGGCTGGGGTGCAGCGGTGGCACAGTGTGCCTCCTAGCCCTGCCCACGCTGCCTGCACGGCTGGTCGGGGTTTTCTTTTGGTTTGTTTTGCTGCTTTCCTCCGCTCTGGGCTACGTGCCACTCTCCTGGGACCCCAGCAATTGAGAGAAGTTGATATGTTTACATCCAAGGAGCTGCTTTTAATCAAACATCAATAAGTGCATTTCAGCGAAGCAGAGCCTGAAACAGAGCTCCTCTCCGGGGGCCACTGCGTGCAGGGAAGGGGCTGGCTCCTCTGCAGCCCTCTGAGCCCCAGGGCCGTGCTCTGGCTGAAGACTCCCTGCCCTCATGCACCCCAATGGGTCGGGCTCTTCCCTGCCCTGCTGCCCCATATCAGCTTGTGGTGCTGTACCATCCTGGGGCTGCTGCAGGCAGCGTTCCCGTGGCTCCCAAGGAGCTGTCGTGCAGAGGAGGTGACCCCAACCCAACCCAGGCCATGCCTCGTCCCAGCCACGTGGGCACAGGCTGCACCCCGCAAACAGCAGCTCCGGAGGAAAGGTTTCCTTAGCTGCTAATTGAATTACATTGCCACAGAAAGCCGAGAAGTCGTAGCTCATTAGAGCCTCTTGTGTCCCATTATAACAGTGTGTGTTGCCTTTGCGGATTGTCATTATCATATATTACTGCGGGACTCAGCAGCGCTGTTTGTTTATGCATTACATTTTTTTCGGCTTACCCAGGCCGCCCCCACCCCCAGCCTTGGCGCTCTGGGGGACACGAGGTGCCCTTTGTGCTGCCAGCATCCATCCCAGCTCTGCCACCCAACGCCAAGTGCTCCCAACAGCAGGCAGTGCTGGGCTGTGGGCAGTGCCACCCTCAATGCCATCCTGCAGTGCCACCCCTCAATGCCACACTGCAGTGCCACCTGCAGTGCCACACAGTGATGATACCTGCAATGCCACCCGGCAGTGCCACCCTGCAATGCCACCTTGCCATGCCAACTGCAGCGCCACACAGTGATGACACCTGCAGTGCCATCCTGCAATGCCACCTGCAGTGCCACTCTGCAGTGCCACACCACAATGCCACCCCACAGTGCCACAGTGCAATGCCCTACTGCAATGCCATTCTGGAGTGCCACTCTGCAATGCCGCCTTGCAGTGCCACTCTGCAGTGCCACACTGCAATGCCACACCACAGTGCCACCCCACAATGCCTCCTGCAATGCCACTCTGCACTGCCACCCCACAATGCCACACCACAATGCCATTCTACAATGCCACTCGCAATACCACCCTACAGTGCCATTTGCAATGCCACTCCACGATGCCACCAGACTGAGTGCTACGCCAGGGCAGTGGGTGTCCCCTCCCCTCCTTTGCATGTTTGGGTGAATATGAGGAAAAAAAGGAGAAAAAAAAAATATCTCTCCAGCATCTGCAATGCAAAGGCTGCTGCCTTGCTGCTGTGGAATCACGCTCTATATTCTGCCCAGGTTTATACGAGTGAATTATGCAAATCTGTGATGGAAAACATTCTTCCTCTCATCCTCGGGAGTGTAAAACCTTAGTCAATAATTCATACTCGCACGTCTCCGACTGGAGGCTTTCTCTTCATTATAGCGTGCGCTTGGTTATTTGTCTTTCACGTTTTATTGTCTACCCCGGTGTAATGCTATGCATTATAAAATTTATCTGCTTCATTATTTTATGATCCTGAGCCGTATAATGCAGCGAAACGCTTCCGCTCGGGGCTGCGTGTCCTCTCGGTGGGCTCTGCACCCAACACCGCCCCGTTGGCTCCGGGGGGTGCCTGGCGGGTGGCTGAGCCGTGCTCCATCCCGCAG
Seq C2 exon
TCCCCGCCATGATCACCTCGCACCCCAACACCACCATCGCCATCAAGGGGCAGAGCAAGGAGCTGAACTGCACGGCGCGGGGCGAGCGGCCCATCATCATCCGCTGGGAGAAGGGTGACACCGTCATCGACCCCGACCGCAACATGCGCTACGCCATCGCCACCAAGGACAACGGCGACGAGGTCATCTCCACCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.4=95.0)
A:
NA
C2:
PF0767911=I-set=PU(66.7=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]