GgaINT0140202 @ galGal3
Intron Retention
Gene
ENSGALG00000024167 | ISG20L2
Description
NA
Coordinates
chr25:863688-864563:+
Coord C1 exon
chr25:863688-863888
Coord A exon
chr25:863889-864285
Coord C2 exon
chr25:864286-864563
Length
397 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
TTTGTCACTGTCCCCAACAGGTT
3' ss Score
10.03
Exon sequences
Seq C1 exon
ATCCTGAAGATCCTCTCTGGAAAGGTGGTGGTTGGCCATGCCGTACACAACGACTTCAAGGCTCTCAAGTACTCCCACCCCAAAGAACTCACCCGTGACACATCCAAAATCCCCTTGTTGAATCAAAAGGGTGGGTTCCCCGAGAATGTCGCCATCTCCCTGAAGCGCCTCGCCAAGGAACTGCTGCACAAAGATATCCAG
Seq A exon
GTCTGCTGCTGGCTCTCTTTCTCACTCCTCATCTCAGCAGCTGCCACAGGAGGCTGCTGTGAAGCTACTTCTGGGGCAAGAAATTCCCCAGTGTCCCCAAAAAGCATGGGGAACAAACAGGCAGTGTGAAGGGGCTGTGGGGAGTGTGCAAGAGCAGGAAGGTTTGCCCTGCTTGTTTGTATTCTGTGCTCAGGTAGGGGATGGAGGTGTGTTGTGTCCCATCCTGGGTCTGGGGAATCCCAAGGTCAGTCACTGCCTTGTACCTCGGTCTCTTCCCTGGAGGGCCTCTTACAAGAGCAGCTCAGCTGCAGAGCCAGCAGCTGAGAATGTTGCTGGGGCTTTTTCATTCTCAGCAGTGCCCTGGGCTGTGCCAACCCTTTGTCACTGTCCCCAACAG
Seq C2 exon
GTTGGCAAAAGCGGACATTGTTCAGTGGAGGACGCCAGGACCACCATGGAGCTGTACAAGGTCGTGGAGGCAGAGTGGGAGCAACACTTGATGAAAGAACAACACTCTAAGCAGGAGTGACTGCCCCCACAGTCCATCCCAGACCTCATGGGTCACAGAGCGTTGAGCCAGTGGGAGGAAGAATAGGATGGAGCAGAGGCAGCAAGTGCTGTGGGGCACTCTAGCTCACTGGTAGTAGGGATAGTGGCATTACCAAGTTATGACTGTTCTTTCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024167:ENSGALT00000040831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCACCCGTGACACATCC
R:
TACCAGTGAGCTAGAGTGCCC
Band lengths:
351-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]