RnoINT0075727 @ rn6
Intron Retention
Gene
ENSRNOG00000011402 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:RGD Symbol;Acc:1359413]
Coordinates
chr2:187310784-187311676:+
Coord C1 exon
chr2:187310784-187310984
Coord A exon
chr2:187310985-187311438
Coord C2 exon
chr2:187311439-187311676
Length
454 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CATGTTCTTTTCCCCTTTAGACT
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATCTTGAAGATACTCTCAGGGAAGGTAGTGGTAGGACATGCCATTCACAATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACTCGAGACACTTCCCAAATACCGCTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTGCTGAGTCGGGACATCCAG
Seq A exon
GTAACTTCTCTCCAAGTGCCCCCACCAACCGTCACCCAGTAGTCTCCCTGTCTGTAAGGAGAAATAATTCCTGAGTACTTTATGGACTGTACCAGATGATACAGTGGGAAAAGAAGGCCGCTCAAACATTTAACTTGCTTAGCAGTCAGGACAGTGGCCACAGAATGTGGAGCTGTGGGTACATGTCACACAGAGAGCATTTAAGGAAGAAGACTCAGAAGGCTTGTCTGAAATGTCCTGCTCTGCTGAACTTAATATGACACAAGCACTGTCATAGGAGTGAATTGGCTTTCCGGGAGGGGAACTCAGCGATGTGCTAGGAGGTCCCCAGTAGACTCCTGATAAAATTCATAAACTGTAAAAGATAAAGGATGGATGACTAGCAGGCTACAGGGGGTCCAGAGTTGTCTAGGAAAAGAAATAGTTTTGGTCTTCATGTTCTTTTCCCCTTTAG
Seq C2 exon
ACTGGACTAAGTGGACATTCCTCGGTGGAAGATGCCCAGGCCACATTGGAGCTGTACAAGTTGGTTGAAGTTGAATGGGAACAGCATCTGGCCCAGAATCCTCCAGAAAATTAGCAGTCCCAGGGAGACACATGCAGTAAACCAACCCACAGTTCTGCCAGCTTCTCACCTGTAGAAGCTGGAATCATTGGGGAGAGGAGCTTGACCAGAGACTTAATACCCATTGAAATTTCATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011402:ENSRNOT00000015471:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAGTGGTAGGACATGCCA
R:
TACAGGTGAGAAGCTGGCAGA
Band lengths:
353-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]