GgaINT0141334 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2492286-2493256:+
Coord C1 exon
chr26:2492286-2492465
Coord A exon
chr26:2492466-2493076
Coord C2 exon
chr26:2493077-2493256
Length
611 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATTCTCCTCTCGTCTTTCAGTGG
3' ss Score
10.45
Exon sequences
Seq C1 exon
AGGTGGTGTGTCCAGTGCCACAGATCCAGAATGGGAGAGTATCCATTCCCAAACAGCGCTACAGATACAAGGACACTGTTAGCTTTCAGTGCCATGAAGGGTTCGTGCTGAAAGGCCATTCCATGGCCCAGTGCAAAGCTGACAAAACGTGGGATCCTCCTGTGCCCATCTGTGAGCAGG
Seq A exon
GTGAGTGTCACTGACTTGGTGACATTGCAGGATCCTCCTGGTTGCTGCTGCCTGCTTTCTGAAGCCACATCTGGCTTTCCCTTTCCTGGTTGCTCTGATTGCTATAAGGAGAAAGCAGAAGGCATTCCTTTCACCTGTGACTCTTTCCTCACACAGGAACTAAGCCAGGTTGAGGGCAGTGCAGTAAGTGGGATTTATGCTTTTCTTCCCTGCTTGTTGCAGTCCATAGTCCACAAGCTTTTCCATTTCTGATAGATAGAAACTCAGTACCTGTATGGCAGGATGCTGACTATAAGAGAAGAGGGACTTATTTGCTGGAAATAGAAAGGAAGGATGATAGAAAATGAAGGTAAATTTGTGCATTGCATGTGTTCAACCAAACGTGTATTTTCAACTCTTAATGCTGCATCTAGATGCTATTACCATCCTGCTGCTGCAACGAGTCCAGGTAGGTGATAGATGGGAGGCAAGACTTACCAAACCTTAACTGCTCCTCCCACCCGGTCCTGTTTTTTGAGGGGAAGAAGAGTAATTACCCATTATCTTTTCTTACACATCTGCTTTTTCAGAATTTAGCTTCACCTTCTCACCATTCTCCTCTCGTCTTTCAG
Seq C2 exon
TGGTAAAGTGTCTACCTCCTCCAAGCATCATCAATGGGGAACACAGTCATTTCTCAGACACATTTGGTGTAGGTGCAATCGTGCACTACCGCTGCAAACCGGGCTTCTTCCTCACTGGCAATGAGTCCATCCGCTGCACACCGCATGGGGTCTGGAGCCGTCCTCTACCTCGGTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCACAGATCCAGAATGGG
R:
CTCACACCGAGGTAGAGGACG
Band lengths:
345-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]