MmuINT0041967 @ mm9
Intron Retention
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196982474-196983738:-
Coord C1 exon
chr1:196983331-196983738
Coord A exon
chr1:196982553-196983330
Coord C2 exon
chr1:196982474-196982552
Length
778 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTCAACTTTGTCTCTCCAGAAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
AAATCACCTGCCCACCACCTCCTGTTATACACAACGGGACACATACATGGAGTTCCTCAGAAGATGTCCCATATGGAACTGTGGTCACATACATGTGCTATCCTGGGCCAGAGGAAGGCGTAAAATTCAAACTCATCGGGGAGCAAACCATCCACTGTACAAGTGACAGCAGAGGAAGAGGCTCCTGGAGTAGCCCTGCTCCTCTCTGTAAACTTTCCCTCCCAGCTGTCCAGTGCACAGACGTTCATGTTGAAAATGGAGTCAAGCTCACTGACAATAAAGCCCCATATTTCTACAATGATAGTGTGATGTTCAAGTGTGATGATGGATATATTTTGAGTGGAAGCAGTCAGATCCGGTGTAAAGCCAATAATACCTGGGATCCTGAAAAACCACTTTGTAAAAAAG
Seq A exon
GTAAAAAGGCAAAGCCAATGGAAAATTTAAAAGATATTTACTTATTTATATAATTTTTATGTTTTTAAATTGAATTGAGGGGCTGGAGATAAAATTTGGTGCCTTGCACAAACTAGTCAAGTATGAGCTATACCTCCAGCTTTAGTCTTATTTATTATCTTCCACTCAAAACAAAACATAGATTACTTTCATCTATTTGAAAGAAAGTTATAAATCTGTTGTATTGTGATCTTTGCATAAATGTACCCTTGGATTTAGAACATATTCAAGATATATAATGAGAAGACCTTTGAAAGCAGTCTCATACCAAGAAGAAAGACAGCTCAGTAACTGGAGGAACATTCACATTATGGTCAGGATCTCACAGTCCTGAAGGCAGACAGTGGATAGGTTTGTTCTTCAACACGTATCCAGGATCACAAATATAATCACATAACAGAAACCTTCTATGATGGATGAGAGCTATGCCTGCAAGGTTTCAAATTGGCACCATCTGTTGTGTTCTTACAGTTCTCTAATAGAATGCTTGTCATTGGTGGTTATGTGTGATGTTTGTTCTCCAGGCCACCACCCTCTTAGCGCCCCCCCCCCATATATATATGACTCTGGGATAACTTGTGACCCTTGCAATAAGCCATGGAAACAAATCCACCCATTGTCTTCAGGACAATAGATTCTTATAGATTCTTGGACATAATGTGAAGGTTCTTTTGGTTCCTGAGTCATCTTTCTTTTAGCTATGAGGAATCTAAAAGCAATCTCAACTTTGTCTCTCCAG
Seq C2 exon
AAGGATGTGAGCCTATGAGAGTACATGGCCTTCCAGATGATTCACATATAAAACTAGTGAAAAGAACCTGTCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-Cr2:NM_007758:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=41.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGTGCTATCCTGGGCCA
R:
TCTGGAAGGCCATGTACTCTCA
Band lengths:
356-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: