RnoINT0041753 @ rn6
Intron Retention
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113907135-113908378:-
Coord C1 exon
chr13:113907971-113908378
Coord A exon
chr13:113907217-113907970
Coord C2 exon
chr13:113907135-113907216
Length
754 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTCAACTTTGTCTTTCCAGAAG
3' ss Score
9.07
Exon sequences
Seq C1 exon
AAATCACCTGCCCACCACCTCCTATTATCCTCAATGGGACACATACATGGCGTTCCTCAGAAGATGTCCCATACGGAACTGTCATCACTTACATGTGCTATCCTGGGTCAGAGGAAGGAGTAAAATTCAAACTCATCGGGGAACAAACCATCCACTGTACAAGTGATAGCAGAGGAAGAGGCTCCTGGAGTAGCCCTGCTCCTCTCTGTAAACTTTCCCTCCCTGCTGTCCAGTGCACAGAAGTCCATGTTGAAAATGGAGTCAAGCTCACTGACAATAAAGCCCCATACTTCTACAATAATAGTGTGACATTCAAATGTCGTGATGGATACATTTTGATTGGAAGCAGTCAGATCCGGTGTAAAGCCAATAACACCTGGGACCCTGAAGCACCACATTGTAAAAAAG
Seq A exon
GTAAAAAGGCAAACCCAATGGAAAATTTAAAAGATATTTACTTATGTATATATGTTTTGTGTTTTGAAATTTAATTGAGGAGCTGGAGATCAAATTTGGTGCCTTACACAAACTACCCAAGTATGAGCTACATTTCCAACTCTAGTCTTACTTATTATCTCCTACTCAAAACAAGAGTCTTGAAATGAAGGCAAAGGGACACAGATTACTTCCATATTTCCTCTGTTCAAAAGAAAGCTATAAATCTGGTGTATTGTGATCTTTGCATAAATCCAGTATCCAAGATATTTAATGAGAAGAAGCAGCCTCATACCAAAAAGAAAGACAACTCAGGAACTGAAGGAAACTTCACATTATGGCCAGGATCTCACAGTCCTGAAGGCAGACATGTTCCTCAGCATGTATCCAGGATCACAAGTATAATCACACAACAGAAACCTTTCTATGATGGATGAGAGATTCCTGAACCATGCCTCCAAGGTTTTAAATGGGTATCAACTGTTGTGTTCTTTAAGTTCTTGAGTAGAATGCTTGTCACTGGTAGTTATGTGTGATGTTTGTTCTCCAGGTCACCACCCCCTTAGGCCCCTCTAAGTTGGCACATATGTGACCCTTGCTGCAAGCTATGGAAACAAATCCACCGTTGCCTTCAGAACAATAGAGTCTTGGACACAATGTGAAGATTCTTTTGGTTTCTGAGTCACCTTTTTTTGTTATGAGGAATCTAAAAGCAATCTCAACTTTGTCTTTCCAG
Seq C2 exon
AAGGATGTGAACCTATGAGAAAACTTCCTGGCATTTCAGATCATTCACTTATAAAACTAGTAAATAGAACCTGTCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164:ENSRNOT00000010910:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=41.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTATCCTGGGTCAGAGG
R:
TGCCAGGAAGTTTTCTCATAGGT
Band lengths:
348-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]