GgaINT0141338 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2494636-2496256:+
Coord C1 exon
chr26:2494636-2494815
Coord A exon
chr26:2494816-2496076
Coord C2 exon
chr26:2496077-2496256
Length
1261 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCCTTTTCTGTTACTTTCAGAGA
3' ss Score
10.2
Exon sequences
Seq C1 exon
TGGTGAAGTGTCTTCACCCTCCAGCTATCACCAATGGGAAGCTCCAAGGCAACACTTCAGACACTTTTTTCTATGGAGTATCTGTGTCCTACAGCTGTGATTCTGGTTATTCACTCACTGGGGATGCTTTCATCACCTGCACAGCATCAGGAACCTGGAGCCCTCCTCCTCAATGCAAAG
Seq A exon
GTGTGTGTGTGAGATACGTGGGCCAAAATCTAAGCAGTAAAATGTTCTGCTGCTGCTAACACTGAATTCTACCCATTTAGTTGGCTTGGGAACCACTTCCACATCACAGCTAGTGATGTTAATTACTAAATGGCCCATATTTTTATATAACTGGGAAGAGTATAAAATCATGATAAAGAAGTAGGATGGGAACTACTTAATGCTACCAGGCAGAAGGATATGAGTACAGTGGATGAAATTCCGGAAAGCAGTTTTAATTCTTGCGTCATGTTCTGCATCTCTGCTTTCATTGCTATGAATTAGTTGTACATTAATATTTCTCCCTTAAAAGCTTTTTCTCCTTGAGGAATAGAAACATTCTCCCCTTCCCTTTCCATGCCCTGTTATCACTAGCAGGAAACAAAGGAAGTGATTAGATCTGATGACTTTTCTCTGGCGGATTACCTGTAGTTGACACGTGAGTCTTACTGCTCCTTTCACGTAAAGTGCTTCTACTTCTGTGACTTGGCACTTCTGCGTAGCACACGGTCAATTTCAGTCATCAGGCAAATGTGACTCATGGCCATCTCATGAGTCTAGCAGGATTTCTAGTGTGGGTGTTCCCGCATGGAAAACTGGGCGTTCAGCAGAATAAATTCATAGGGCATTTCCTTGGTGGAGCTGTACAACAATGACTCAATAGAAATGCACCTGGATAACAATAAGAGGAAATAACGTACACCAAACACACAAATAAGCCAGTAGCTATTTAAAAGAAGCAGAGTCACAGAAGAATTCTCCCTGTTATTCAACATTCTCATGTTTTTGAATTGTCCTTAGAAACTATTACGTGTAGTTGTAAAAATAAATAAGCCATAAAGTAATGGTCAGAATTTACATGCTGATGTTACCCTCTGTTCTCCACTGAGAATTTTCTCCTCTAGAATCCTTGGGCTTGGACTGTAAAAGGTGATCAGACAGACCTGATACACCACTCTTCTCCAAATGTCTTGCTAGCCCAGCATCAGAAAATCTCTTTCTCTGGCAGGTCTCCTTCCAGGCTACAATTGTTCTCCAGGGGGGTACCAGTGGTAAGATGCTGACCGGTACAAACGTCTACATGGTGGCATTAGGCACAGAGCTCCTTTTGTAGCCACAAGGAAATGAATCATCACAAGAATTATTCGAAAAGAGCTCAAGAACAATGCCTTAAATAACCCACACTTGTACTTTCCGTATTTTATGTTCCCTCGCGCTTACTGTCCTTTTCTGTTACTTTCAG
Seq C2 exon
AGATCAGTTGTGTATTCCCAGAAGTTCAAGGCGTTAAGAAAACCACGGCTGGAAAAACATACAGATTTGGGACTAACATCACTCTTGAATGTGATGACGGGTACACGTTGGAAGGCCTCAGTCAGATTCAGTGCCAGGAGAACTTCAGCTGGGACCCTCCCGTGCCAGCCTGCAAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0279317=HRM=PD(13.0=9.8),PF0008415=Sushi=WD(100=91.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTCTTCACCCTCCAGCT
R:
TGAGTTTGCAGGCTGGCAC
Band lengths:
355-1616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]