RnoINT0041757 @ rn6
Intron Retention
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113901538-113905189:-
Coord C1 exon
chr13:113905004-113905189
Coord A exon
chr13:113901724-113905003
Coord C2 exon
chr13:113901538-113901723
Length
3280 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TTTTTTTTTTTAAATTGCAGAGG
3' ss Score
9.49
Exon sequences
Seq C1 exon
CTTCTTTAGGGTGTCAGTCTCCACCCACAATCCCCAATGGGAATCATACTGGTGGGACTATAGCTCGATTTTCCCCTGGAATGTCAGTCATGTACAGTTGTTACCAAGGCTACCTTATGGCTGGAGAGGCACGTCTTATTTGTACTCATGAGGGTACCTGGAGCCATCCTGCCCCTTATTGCAAAG
Seq A exon
GTACTTTTTCTGATTTGTTGTTGTTATTATTTTTTATAGCAAAGTAATTTATATATATGTATATATGTATATATATATTCTTTCAAGTATTTTCAGATTAAAATTATTAGAGATACATTGTATGATAATTAAGTATACTTAATCAATTAATACAAAGTTAAAGTTTACTGCAAAGATTATAGTTATAGTCACATTATTGTTAAAGTTATAATAAGAGTGCATTTGAAAAACATCCCTATACCTTCAGTCATATGATTGTGGATATAAACTATAGAAGACTTTTGTACCACTTACCACTATGGAAAATATACTAGAATTTACTGTTTTTCATTTATTTAGAAAATATGAAAGCAAAAACTCTTGTTTGTATTAACAATGTTTTTTAAATTAATTATTTTATTTACTTACATCCTAAACGTTGCCCCTCTTCTCAGAGTCCTTTACCCCTTCCCCTCTCCTCTTTACCTCTGAAAGGATGCATCCCTCCTCTCCCATCCCCCTTCTCTGGGTCATCAAGTCTTTACAGAATTAGGCACATCCTTTCCCACTGGGGCCAGACAAGGCAATCCTCTGCTAAGTATGTGCCGGGGGCCTCGGACCAGCCTTGTATGCTTTGGCTGGTGGCTTAGTCCCTGGGAGCTCCCCAGCATCCAGGTTAGTTGACAGTGTTGGTCTTCCTGTGGGGTTGTCATCCCCTTCAACTCCTTCAGTCCTTCTCCTAACTCTTCCATAGGGGTCCCAACCTCAGTCCAAAGGTTGACTGTAAGTGTCTGCCTCTGTCTCAGCCAGCTCTTGGTAGATCCTCTCAGAGGACAGCCATGCTAAACTCCTGTCTTCAAGCACAACATAGCATCGGGAAGTGTCAGGGTTTGGTGCCTGCTCATGGGATGGATCCCTTATTGGGCTGGTCACTGGTTGGCAATTCCTTCAGTCTCTGTTCAATTTTTGTCCCTGCATTTCTTTTATATAGGAACAATTCTGGGTCACAAATTTAAGGTGGATTGGTGTCCCTGTCTGTCCACTGGGGGCCCTGTCTAACTACCAGAGGTGGGATCTTCATGTTCCATCTCCTCACTGTAGGGCTTTTCAGCTAAGTCCACACTGAGTCCTGGGCCCCTGGCACATCCCAGGTCTCTGGGATTTCCTAGAGATTTAAAGGTAGTTTTTCTTTAAAGGAAAGTTACCTAAGCTTTCACAGAGGGGCATATTAAAATATTTACATAAAATTTTCTAAGATAATCCCTTCAGAAGGGAAAAGTTGATGTAATGGCACGTGCCTAAAATGCTATAATTGGGGAGGCTGATACAAGATTGTGAATTTGATTAGATTCCTATAAAAAAAAGAAAGATGACTCAGGAACCAAAAGAATCTTCACATTTTGCCCATGACTCTATTGTCTTGAAGGCAATGGCTGGATTTGTTTCCATAGCTTGTAGCAAGGGTCACATATGTGCCAACCTAGGGGTGCCTCAGAGAGTGGTGACCTGGAGAACAAACACGCACGTAACTACCAGTGACAAGCATTCTACTCAAGAACTGAAAGCACACAACCTAGGGTGCTAATTTGAAGCCTCGAAGGCATAGCTCAGGAAACTCTCATCTATCATAGAATGATTTCTGTTGTGTGATTATACTTGTGATCCTGGATTCATGCTGAGGAACAAACCTGTCCACTGTCTGCCTTAAGGGCTGTGAGTGAAAATTACAATGTTCTCTTGATTCTGTTTCCCTATTTGGTACTGAGATTATGGACAATTTTTGCAAATTTGATAAAGTAGTTATCAACAATGTATATAAAATAAGCATAATGAGTTAGCATAGAATATTGCTGAGGATTCTACTATATGTCAGATGCTCCGATTATAATTTCATGTAATATTCATGAGACTCAAAGGAGAGTGGTGCTATTATTATTCTGCCACTTACATAAGCTTCCAATGTCTCAGAGAGATTTGTGACTTACCCAAAGTCACACAACTAGCAGTGAGTATTCAAGTCCAAACTCTTACTAGGCATGTTTCTAATTTTCATATTGTGAAACAATGTTATCATATATAAAATTCAAGTTCAAGGACTGTGCAATTGGAGCAAAAGATGGCCCGGTGGTTAAGTGTGCACACTGTTTTTCTATAAGACCCAAGTTCAGTTCCTATCACCCACATAGGGTAACTCACAGCTACCTATAACTCCAGATCAGAACATCCAGTGCAGAAAAAGTGGACTTTCTGACCTCTGAGGGTACCAGCATACATATGCTGTCATTGTACACACACACACACACACACACACACACACACACACACACACACACACACACAGGGAGGGAGTATATTGAGGAGAAATAAATATTTTAAAAAGAAATGTACAAACAAGTTAGCAAAAATATCATTATATTTTAAACAGGTTTAAGATTTTGTTTTAGATCGCCTGTGGTGTTAAGTCGATTTTATAAGTAGTCATTTGTTTATCCTGGCTAGCTACCAAATAAATGAGACAGACTATAAGATGTATCAAGCTTTATGGCACAATATCTGAGCAGTATTGATCTATTAATCCTCTAAGATAATCTGGCTATCTTCCAGCCAAAATCCATGAGATACTTGTATTTTAGTGTTGATCAGGCTCTCTCTGCTCCAAGTGTCTTCTCATGGTCTCTCCTTCACCTTCCTTGTGGTGAATCCTCCCCTCTTCTATCTCTTTCTTCCCCTCCTGTCTGGGATCAGAAATCTAATCATATTTTCTCCTTTGCTCAGTCATTGGCTGATCAGCTTTTATTGAGAAATCAGAGAATAAATGAGGAGCAATGTTTACACAATGTTGAGACAGCAGATTCTTGGAACATACTGTTCCTATACTGTAGTGTGCAGGCTACAAGTTGAACACTATTGATTTACATGCTCAAAATATAATAGAAGAAATGAGAATGCATGTGTATGTATGAGAAGTGGAGAGTAAGACTAGAAGTCAAGAACAGTAATTTGGAACATTTAATATTGTACATTCATCCCTTAGTATCTCTCCAAGAAGGCATTAGAATTTTTTAAATATCATTGGCACAGACATGCAAGTAGAAAACAGCCCAGCTTAGCCTGCTAGGTGGTTGTAAAATGGCTGACAATAAAGACTGTTCTATTGCAGTCTGTTATTCAGTGAGGCTTTGATTACCATAATGAAATAAGTTGATTCCATAACCTTTCTAGTAAGGACAACTTCTACTTTCTTGGCAAAAGTACAAATCATGGCTCTGTATTAGTAAGATTTTTTTTTTTTAAATTGCAG
Seq C2 exon
AGGTAAACTGTAGCTTCCCTGAAGATACAAATGGAATCCAGAAGGGATTTCAGCCTGGGAAAACCTATCGGTTTGGGACTACTGTGACTCTGGAATGTGAGGATGGGTATTCCTTGGAGGGAAGTCCACAGAGCCAGTGCCAGGATGAAAACCAATGGAACCCTCCGCTGGCTATCTGCAAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164:ENSRNOT00000010910:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]