GgaINT0141341 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2496880-2497291:+
Coord C1 exon
chr26:2496880-2496955
Coord A exon
chr26:2496956-2497206
Coord C2 exon
chr26:2497207-2497291
Length
251 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CACTGCTCCTTTTCACGTAGCTA
3' ss Score
5.37
Exon sequences
Seq C1 exon
GAATTGCAGCTGCAGTCGTTCTGCTTCTCCTGGGTGTGACCATTGGCTGGAAAATTATCTCTAAGAAGAAGGAGGG
Seq A exon
GTAAGATGTCCTGCTGGTTATCAATTCATATCTTTCTTTGCCCAGCTGTGACTCTTATACAGTCAAAACACCAGAATTATGAGGCTAGGTCTTTTAATTTTGTATTTTGAGCTTTAAGTTGCCAGCTGTACTAAGTGCATCAGCTTGGAGTCAGTTGTGTGGTTGTGTTGTTTCACATCCAAGATTCTTCCTAAGAGGACATACGAGCGTTCATTATGGACTGACATAATTCACTGCTCCTTTTCACGTAG
Seq C2 exon
CTACTACCGTACATATGAAAACTACAATTACAAAACCTCTCTGGACTAGATGACAGGACAGAAACGTTCACGTCTTGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCAGTCGTTCTG
R:
CGTGAACGTTTCTGTCCTGTCA
Band lengths:
143-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]