GgaINT0141341 @ galGal4
Intron Retention
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2627129-2627540:+
Coord C1 exon
chr26:2627129-2627204
Coord A exon
chr26:2627205-2627455
Coord C2 exon
chr26:2627456-2627540
Length
251 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CACTGCTCCTTTTCACGTAGCTA
3' ss Score
5.37
Exon sequences
Seq C1 exon
GAATTGCAGCTGCAGTCGTTCTGCTTCTCCTGGGTGTGACCATTGGCTGGAAAATTATCTCTAAGAAGAAGGAGGG
Seq A exon
GTAAGATGTCCTGCTGGTTATCAATTCATATCTTTCTTTGCCCAGCTGTGACTCTTATACAGTCAAAACACCAGAATTATGAGGCTAGGTCTTTTAATTTTGTATTTTGAGCTTTAAGTTGCCAGCTGTACTAAGTGCATCAGCTTGGAGTCAGTTGTGTGGTTGTGTTGTTTCACATCCAAGATTCTTCCTAAGAGGACATACGAGCGTTCATTATGGACTGACATAATTCACTGCTCCTTTTCACGTAG
Seq C2 exon
CTACTACCGTACATATGAAAACTACAATTACAAAACCTCTCTGGACTAGATGACAGGACAGAAACGTTCACGTCTTGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175:ENSGALT00000046167:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCAGTCGTTCTG
R:
CGTGAACGTTTCTGTCCTGTCA
Band lengths:
143-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]