GgaINT0141476 @ galGal3
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1018090-1018493:+
Coord C1 exon
chr26:1018090-1018238
Coord A exon
chr26:1018239-1018315
Coord C2 exon
chr26:1018316-1018493
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGGTTGAGCTCCTCTCGCAGTGT
3' ss Score
2.93
Exon sequences
Seq C1 exon
CTCATTGAGCTCACACGACCTGTGGACGCCCACCTGGAGCACGTGGAGTTCCCAGCGCTGCTCCAGCGCCTCAGCCCCATCCTCATCCTGCACATCTTCGCCTCCGCTGTGCTGGAGCGGCGGCTCATCTTCCTGGCTGAGGAGCTGAG
Seq A exon
GTGAGTCCCGAGCTGTTTCTGTTCCCAAAATCCCCCCCCAGACCCCTGGAGGAGCACAGGTTGAGCTCCTCTCGCAG
Seq C2 exon
TGTCCTCTCACAGTGTATCCACGCCGTGGCTGCTCTCCTCTACCCCTTCACGTGGGCTCACACCTACATCCCTGTGGTCCCCGAGTGCCTGCTCGACACCGTCTGCTGCCCCACACCCTTCATGGTTGGCATCCAGAGGCGGCACCTGGAGCGGGTGCTGGAGCAGCCCATGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(26.5=100)
A:
NA
C2:
PF0214116=DENN=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCATCTTCCTGGCTGAGG
R:
CCTCTGGATGCCAACCATGAA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]