RnoINT0046504 @ rn6
Intron Retention
Gene
ENSRNOG00000017680 | Dennd2d
Description
DENN domain containing 2D [Source:RGD Symbol;Acc:1305120]
Coordinates
chr2:209107704-209110296:+
Coord C1 exon
chr2:209107704-209107852
Coord A exon
chr2:209107853-209110118
Coord C2 exon
chr2:209110119-209110296
Length
2266 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GCCTCTATTCTGTGTTCTAGTAC
3' ss Score
8.52
Exon sequences
Seq C1 exon
TTCATCTCATTGACACGGCCCCTAGACTCCCACCTTGAACATGTGGACTTCAGTGCTCTGCTGCAATGCCTCCATTTTGAGCAGATTATTCAGATCTTTGCCTCTGCAGTACTTGAAAGAAAGATCATCTTTTTGGCAGAGGGTCTGAG
Seq A exon
GTAAGCTCAGCCACTGACTGGCCACACTAAAGCTGCATCCCTGGGATCAAGGGAATATTCTGGGACTTCTTGAAGGCAGTCAGATTCTACAGCCCACTTTCCAGCTTCCAGTTCCTGGATTGCATTTTAGGCCTAGAGAAATAGCTAGTCCAACTTGTCCAGCCATCTCCAGACTTGCACTTGATTGTTGCTTGACTATGTATGGTCTGAGGACATGGAGTGTTCCTGATATAACACAGGCTTGGCCAGCCAGGGTGAATGCAGACATGATTCTGCCCTTTCAAGATTAGGCTAAGGCAGGGAAAAGGATGTAGAAGAAGACAGGAAGTTGTATGGAGGATATGCTAATCTATCCATTTGTAAACTCACTGGACAAGTATTTATTGTATGTCAGCTGTTTGCCAGATGCCAAGCACTAAGGAGATAGCAGGAAGACTGTATTTACCCTTAAGTAGATGAAGGTTTATGTATTGATTTTGAGCTTATATGTACTGAAGCGAGTAGAATGACTTTCAAATCTTGTTCTTCCACCTTTAGCTATGGTTCCCCTTAGGTCAGCTTCTTAACTTTTTGAAGTCAAGATGACATTATTTTTTCTGTAGGATAGAAATGATGCAGATGTGCTTTATAGGGTTGTGGTGAGGATTAAAAGTGATAATGCACAGTGGTACCCAGAACCCCACCAGATGCAGATTGGTGAGGACTAGCTGCTATTCTCCATCAATTCTTGATTGGTGAGGACTAGCTGCTATTCTCCAGCAGTTCTCAGTTGAGCATATATCTGTGTGTAGCAGAAGCAGGAGGTTGTCATGTGTTGGCTGTTGCTTTGGAGAGGATTTGAGTCTGACAAAGGATGTGGAGAGACATGTGACAGGCAAAGAAGAGAAATTGATAAAATCAGGAGATTGACTGTGAAGTTCTGGCTGGCTTAGAGCTCACAGAGATTTGCCTGCCTCGACCTACTGAATGCTGGGATTGAAGGTTTGTGCAGCCTCAGCAAGAAGGAATAATTTTGAGCTGAGACCTAGTACTGTCCATTAGAGAAGAGGAAGAAAAGGAAGTTGAAAAACAACAGAGGATCAAGGGAATGACATGAATTCTAGAAGAAAGGAAGCTTGGCAGGGATCAAGGGTCTGTGTTTTAAAAAATAGTAACATCACAGTAACCAAGAAGGAAACTATCATAGGCTAATCTTGTGGGAAGGGGTATCATTTTTATTTTGGGGATTGTTTTTCTACTCTGGGCCCTGTGTGGAGGAAGTTTCTGTGGTAGCTGGGTCTCAGTTTCCAACTAGGTACTTCTGATCAGTATTTAGGAAGTTTCAGGAACAAACTTTCTCCAGGAACTATTACAACTTCCTACTTTCTTCCCGCACAGAATTTCCAGACCCTGGAAGCTGGAGCTGGGAGGGTACTTCTAGCCAGCCAAGTTTGTTAGGGAGGCACTCAGAGACTCGATCGTTCTAACTCAGGAAGTGCTAGTCTGATACCAAGGTTTCCGCATCTGTGTTTTTATTGGCCTTGGGTGTGGGGTAATTTGGCTGGAGAAATGAAAAGCTATGAGAGCTAGTGGAGAAGAGGAAAGCCAGAGACTGAGACTGGGTATGGTGTGGGTAAGGAAGGCGGCTGAATTGCGACTGCGATAGTAATGACAAGAGGAATCCACGTAGCAAAATCTTGAGGCGTCACCTCTGTGGGACTTTCCAGAACCTCTGAGTATTAGTTCCTGGAATGGAGGAGTTTCCCAAGCTAACTCAGGACCAACCTGGCAGCTTCCATATAGCTTCAGAGAGGCATGGGAGGACATGGCTGTGCATGGAGGCCCTGACTCTTCACCGCAGCCTGGTGTTAACTGGCTTGTTTCTTCACTGTGTTGTGAGTTCTTCAAAGAAGGGCCAGTGTTATTCTTCTAGTTAGTGCAGTCCTTTGCAGAGTAGAGGCTCAATCATACCCCAGTTTAAAAGCAGGCACATCTTTCTCCCTCTCCTCTTCTGAGCCACCTTTATTTTTAGCCAGTAATGACTTGAGAGAACTAACTGAGAATAGAGATTAAAGGGGGCCCCACCCTGGTTAGTGGAGATTTGCCTATCCTGATTTCTACCCTTCTCTTAGCAACAAGTAGCTACAAGCTTTGTGATCAGCATGGCTTCCAGACTTGAATTTTTTCCGGTACAGGAACATTGCCAGGAGCTACTGTAGGTGTGGGGCTCTGAGCCAGTGTATAAGAACAGAAACCTTGCTGACCCAGCCTCTATTCTGTGTTCTAG
Seq C2 exon
TACCCTGTCTCAGTGTATCCATGCTGCAGCTGCTCTGCTTTACCCATTTAGTTGGGCACACACATACATCCCGGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGGTTGGGGTACAGATGCGATTCCAGCAGGAGGTTATGGACAGTCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017680:ENSRNOT00000023807:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(26.5=100)
A:
NA
C2:
PF0214116=DENN=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]