GgaINT0141503 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4471979-4479257:-
Coord C1 exon
chr26:4479166-4479257
Coord A exon
chr26:4472050-4479165
Coord C2 exon
chr26:4471979-4472049
Length
7116 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GCTCCTATTCTGTCCCACAGGCT
3' ss Score
9.69
Exon sequences
Seq C1 exon
ACCATGAATGAGATGTCGAGTTTCCTGCACATCGGGGACATCGTCTCCCTGTACGCCGAGGGCTCCGTCAATGGCTTCATCAGCACTTTGGG
Seq A exon
GTGAGTGAGCCCTGTCCCGGCACTGCGGGTTTGCTTCTGGGGGAAACGGGGAAGGGAAGGTGGTGCCGAGGCTGATCTGGGTGGGAAGAAGGGATTGAAACCCCTTTACAGGTGTTGGCCGTGGGGAGGACAGGATATGGAATCCCCTTTGCCTTTGTTGGTTGCTGTTGGGGCGTGATTTGGCCCTGCAACCTACAGCAGCCGTGGGCAGAAGTTATTTTCCCATCTTTAGAGGGTTAAGGTGGGGTCAAACAGCAGGAGGGTCCGTGGGGCTGTGCACAGGGCTGACCGGGATGGTTTGGTGGGGATGGCAGCAGGAGGGCTCCCAGCTCAGCCCTGAGTGGCTGTAGGCTGCTGTCCTGGCACCAGGCAGTGATGGTTTTTGCTGCCCACCTCAAGTGCTGGAGGGGCTGGGGGGAGCAGGGCACGGGCAGGTCCCGGCTGAGCTGTGTCCTTGCAGCCCCCAGGCACACTGGAACAGGAGGGGATCTTGCAGCCCGACCTCAGGGACCTGTCCCACGTCCCTGCTGCTTTCATGCTAAAATAACACTGGAGCGAAACCCCTGGGCTGCACATAGCAGGACCCAAACCTCTCCTGCATCCCTGAGCATCAAGCCTGATGCTGCTTTTAGTATGTGGGTCTGCGCCAGTACTTGCCCCACGGTACATGTAGGAGAGGCTGAGATCAGGCAGGAATGCGGACTTGGATAGGATTCCTGGGGCAGGAGCTGCCCGGCTCTATAATCTGTGCTGAATGCACTTGCTCCCACATGCCTGTGTAGAACTGGAGACGTACATACGTCGCCTACACGTGTACGCACACCCACTGCGGGGCACACGCAGCCTCTCGGATAATGCCCGCTGGAGCCATGCCCTGGCCAGCAGCAGGAGGCTGCCCAAAGCTGTGCTGGTGGGCGCAGGTACAAAACCCCGTGCGTGCAGCTGTGTACGGTGCTGACGTCGGGTCCTGCATGTGTGGGATGCAGCCGTGCTGTGCTCAGCCCTCACCCTGGGGTCCCATTGGGAGTGGTCTCCGTGGTGGGGTCCGTGTGCTTGGCGCTCAGCACCTTCCCATCCTGGCGGTGAGATTGGAGGTGGAGGAGCTCCAGCAGAGCCAGCACCGATTATTAGCCCACGCAGCATGTCCCAATGGCTTGCAAGGAGCCAAACAAAGAGATGTTCGTATACTTTCAGGCTCCAATCCCTTTGTAGCTCTGGCTCCCTTTTCTGCAGGATGCTTCTCTAGTCCCGCTTACATGCATCTGGAAGGCAGGCTGTGCTCCTAGGCCCCACTGTGGCTTTTGCTGGGCCCGCTTTTCCCAGGGCTCTGTTTTCTCTGGGTTATTTCCCACCGTCTGTTTTCCTGTATGCCCCACGACCTGGGAGACCCAACCACACCTTAAATCACTCCTGCGATAAGGGACTGGGTGACTCACTGAGAGTGCTTCTCCCCAGCCCTGCTGCTGCCTGTTTGGGACCTTATTTGGTTCATTTGCAAGGCAAATAGCTCTGCCAGCCCCAGCTGGGTGCTGCGTGCCCAGCTGAGCATCCTGCCAGAAGGGCTCTCTCCATCTTTCCTCCCCCATGGCAGAGGTTTTGGTCCTGGGGGAGTCCGTAGTGGGATCTTTATGGGATGATATAGAGAGTTTCCAGGTGCCCTGTTAGGGCATGCGCCCAGTGTTCTGGTGCTGGGGCTTCCCTGTGCCAGCATCCTGGTGGGGAGGTGAGCTCTCCCCAGGAGCATTTCTATAATCTTTGGGGTGTCCTGGATGATGTGGGTCTAAATGGCACCTAAATACAAACCCAGTGGTGCTTGCAGGTGCTGCTGCAGGATGCGCAGGGCTCTGTCTGTGTTTGGGACTCAGCTGTGAGGTGCAGCAGTGTTTGGAGCAGCTTGCACAAGCTCTTCTTGGATGAATATGGCTGCAAAACACTTGGACTGAAGCGTTGTCTATCTCTGCAGCCTGTGCCTCGCATTAAGCCCAGTAAGCCCAGTGCTTTGCTGGTTCTGGTCAGAAGCAGTGAGTGGAAGAGTCTTTTGTCACCAGCCCAGGGTGATGCCCTGCAGCAGAATGGGACCCAGCCAGCACATGGGGCTGCTCACTACTCAGTCCCACCATCTGTGGGATCTTGCCAGGCTCTTAGCATCCCCCATGAGTCGTGGGGATACCTGGGGGGGGAGGGTGGCCAGCAGCCCTGCTGCTCACTGTCAGTGGGATGCCCTGGAAAGCAGCAGGGAAGCAGAACCAGGCTGCTTATCAAGGCTAAGGCTTAACTTTTGCTAAAGTGGTCTCTTTTCTCCATGCATCCAGGGGATTTGCTGGAGGGGTTGGGGCAGGAGGAGCCCTGCAGCCCCCCCTGACTGACCTCCACCTCTGCTCCAGCCCCAACCACAGTGGGGGCACAGAGCACTCTTCCCGCAGCCACCGACTGCAGCGGGCGTTTGCTCTGAAGGAGGAAAAACATCGCACTGCAGGGTGGGGAGCACTTATGTGCTCAGAGCAAGATGGGGGAATGCTGAGCCAAAATACCCAAACACGCTCAGATGTTGAAGACGGACCAAATAGGAAGAGGTTATTTGAGAAGCACAGGGCAGGAGCTGATCGGGGTTGCATCCCTTGGTTCAGCGCCCTGGGAGCAACGCGTTCCCTTTGCAGAGCTGGGGCAGTAGGACAGGCGCATCTGAGCCGCAGGTTTGAGGCATGGGAAGCAGCCCAGGAGGTGCAGGGAGATGTGGGATCCCAGAGTTGGCTCATCTGCCCTCTAAGCTTGCTTTGAGGCAGGGAAGGGCCCTGCAGGGCTGCCCAGGCTTCGCTGCTGCAGGTTGAGGTTGTCTGAGGAAACGACAGCTTTGTGCTCAGAGGAAATCACCGGTACCTCCTGGGGGCTTTGTACTAAGGGAGCAGGAACTTTTGGAACTGGGTCTGGGATGGGGAAGCAGCTGCTGTGGTGGGGTGCTCTGTGGGCATCATCTATACCAAGCAAAGCAGTGCCAGGCAGGGAGGAGGGCTGGGAGATCTCGCTTTGGTTCCTGCTCCATTGGGGGATGCGGTGATGCTGTGTGCCCTGGGAAAACCACAGCCAGAGGTGTCCCCTTCTCAGCTTGTGTCCCTGCTGGGCCAGCATCGGAGGGCAGGAGTCAGCCAGGAGCAGTGAGATGCTGCTTGGGCTTGAGCTGCCCTGTCCCCGCCATCCCAGAGGCTCAGGGACTGGCGCTGGGGGCTGGCAGAGGTGGCAAACCCGCCCGGATGGCAGTTGGCTGTTTAGCATGAAATAACACCTTTGATGGCTGTAATTGCGATTGCAGGTGGATGTACAGGGTGGAGCAGCTGAGGGAAACACAGCTGGTGAAAGGGCAACTGCAGCCACACTGGGTCAGGACATGGGGAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGAAAGGCAACTGCAGCCACACTGGGTCACGTATGGGGAGGAGACACCCGCCAGGCCGACAGCAGCATCCTCTTGGTGCTGGGACAGCGGGGGCAAGGCTGCATTTTTGTGGCTCACTTGCTTTATTTTTGCTCCATTTGCCCTGCCAGGGCGGCCGCCCCGTGGGCACCATGTCTGTATGGAGCCTGAGGGGCTGACCCAGCCCCGTGCCTGGTGGCAAGCCCTGCTCTCCTCCTCCTCTCCTCCAGGACAGCCCCAGCTGGCCGCTGTCCCCGGGGGGGGTCAGGGGTGTCCGGCGGCCGTGGATTGCAGCGCTGGAAGAGCTGCTTCCCCTGACCTCCGGCGAAGGCTCTGCCTCGCGCTGGCTGGGGGCCAGGGAATCACTTTGTGCTCGGTTTGGAAGCATGCAGAAAGCCCCGCTGGAACTGCTGCGGGGCTTAAAGCTAACCAGATGCTCACATGCGCTGCGGGTAGCAGCATGCAGGGCTGCAGGATCGCACCCCAGGGCGCTTCGAAGCGGCAAAGCGTGAGGTTTGCAGCAGTGCCCTCAGCCTCCAATATCTTCCTCCAGGTGACCAGGCGCCGATGGCATTCTCTCATTAGCACCTGAGAAATGAAAGCCGGCAGCCCCACTGCTCTGATAGCAGAGGGAGCTCTGCGCGGCGCTGGGGGAAGCACATCCCGGCCCCAGCAGCAACCCAGGTGACTCATGTCCACCGTGTCAGGATCCTTTCTGCTTTCAGCAATTCTTAACTGAATAATGCTAGTCCGGAGTATCACTTAAAGAAAAATGATACTTTGCATTCCTGCAGAGTGTGTAATTGGAGCATTAAAGACACGGAAACTGCTCTGAGGTCATTAACTAATTAAGACTTGCAGCTTGGCAGGTTGCTGCCTGCAGTGCTGCGTGGCACAGCCGTGGCACTGGGTGCAGAAGCTGCAGGTGATGGAGCTGGCACCTGCAGGAGGCTCCTGTGCTGAAAATGGGCTGTGTGGGTCAGATGCTTCCTTGGAGACCTTTAGTCACGGTGGAGAACTTACATATTGGAATTTATTTTAAAGAGCAGAAATGAAGGCACCCATCTGCTCCTGTAGGGGGTGGTGGAATTGAATCGGGCACTCGCTGAGGGCTGGTGCTGTGCTACGTAGCTCTCATTTGACTCAGGCAATATGCAGTGCAGAGTAATAGAAACCAAAAGAGCCCACAGTTGGCATTGGGCTGGGCTGAGGCTTTGCATATCTCCTGAGCAGCAAGATACACTCAGTGGAGCCGCTGCTCTTCTCCCTGCTGTGGTTTGTCCCCTCTTTATCACCCTTCTCACTGTCCCAAGTGCCCACAGGAGCATGGGGACATTCCCAGCTCCTTCCCAGCTGTTGTGGAAGCGCTGGGCCGGGTGGGGAGCTCAGCAGCCAACCACAAGTGTGAGCCAAGCCCTGCCTAGCAAAGCACCCAACGTCCAGTTATCAAAACCTCATGAGGTTTGGTTGTCCAAAATCTGGATCTTCTCTCGCAGTTATTAAACTGCTGCTGCTACCAAAAATATTCAAGAGATTGATTTTCTTTCTTTACTTGAAAGCTAAAGTGAATCTCCCCCAAGCCCCAGGAGCTGCAGCTTCAGCAAATCTCTCTCCTGGCAGCTCCCTGACGCCCGGTGCCGCAGCACAGGGCCTGGCTGCATTTTGGGGTCCTAATAGAGGGTGAAAGCAGAGGTCTCGCCGTGCAGTGGGCTGTGCGTTGGGACATTGGCTGCTGCTCCAGCCCCACTGCCAAGGACGCAGCAGCGCCAGGGTCCCTGGGGTCCCAATCCATCAGCGCCGAGGCCAAATTCCTCTTTGTCGAGCAATGGAGAGGAATTTTCCCCTCCTCCAGAGAGCAGCTGGAGCTGCAAGTGGGATCTCTCTTGTTGCAAGCCCTCTGCAGCACGACATGCCGGGCTCCAGCTGCACTTTGCTGTGTTTGTCGGCTGCATTGAGTCCCCAGGGCAGTGCAGTGCCACATGCCCACTGCACCTGTCCTGTCCCCAGCTCTGCATTCCCCTCAGATTGCGTAGCTGCTGCATTCCTGCAACCACTTCCCAGCAGCTCAGACTCAGGTGGGGACACGCTCCTCACTTCCTCACCTGGGGCACAGCGTGGTTTCTCTCCTTGCATCGCTTCCCAGGGGTTGGCAGAAAGCAGGCGAGCGGGTCCAGCCTGTCCCACCGCTGCAGTGTGTTCCCTTGAAAGCCTCAAAGTCCTGCAGAACCAGGTGCCTGCTGGGCCTCGGGGCTCTGGGGCCAAGCAGAGGGATGCCTGGTGTCTGCCTGGGCTTTGCTGGTCTCTGTGACATTGCAGCGATGTCCTGAAGTTGCAGGGAAGGTCCTCAGTGTGCAAGGCTGAGCCTGCAGGAGTCTGGGGAAGTGAGGAGGGTGGCAGGGAGGAAGCACAGAGCTCTTCATGTCTGAACCAACACCTCCAATCAGATAATAACAATTTTAGGGGCCGTGCCACCTCCTGCAGCAGTTTACACCCCGTGCATCCATAGGGTTAGCTCCCAGCTGGGGAAGGAGAACCATTATGTGAAAGCTGAACTCATCACAGATTTGCAGACTGATGGCAGCACGGGGCTGTGGGCAACATCCCCACCCCTGGCCCAGGCAGCAGCCTGCCTGTGCACGGTGCCCATCGCCTCAAGGCAGATTTGGCTCTGCTGGGCGCAGCAGGACCTGCTCCTGCAGGGTTTGGGTGTCAGAGCCTCGGGTATGGATCGCTGAGCAAAGGCCCCAGGACACAGCTCAGTGCTGTGCTGCTGGGTTTGCCCAAAGGGGCCATAAGGAAAAATGCATCGGTTTCACCTGGGGGGTGGCGGTGAGCAAGGAGCAATGTGATGCTTTCGGGGCAGGCACTGAGGAGCTGAGCATCGTGCTGAATATGGGTAGCATGCAAAGGGGTAGAAAACGGGAGATGTGGGTTTTGATGTTTTGGAGCAGGTGCCAACGGTGTGTTTGCTGCTTTGCTTGCTCGAGCCTTGCTGCTGTCTCTTATCAAGCTCTGCTCCTATTCTGTCCCACAG
Seq C2 exon
GCTGGTGGATGACCGATGCGTGGTGGAGCCGGCAGCTGGGGACCTGGACAACCCTCCCAAGAAGTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.8=87.1)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]