GgaINT0141525 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4457205-4458274:-
Coord C1 exon
chr26:4458145-4458274
Coord A exon
chr26:4457263-4458144
Coord C2 exon
chr26:4457205-4457262
Length
882 bp
Sequences
Splice sites
5' ss Seq
CAAGTAACT
5' ss Score
4.45
3' ss Seq
TCTCTTTCTTCTCCCTTCAGCTG
3' ss Score
11.77
Exon sequences
Seq C1 exon
TTCATCCTGAATGTACGGCTGGACTACAGGATTTCCTACCTGCTTTCCGTCTTCAAGAAAGAGTTTGTGGAAGTCTACCCCATGCAGGACAGTGCGGCTGATGGGACGGCTCCAGCCTTTGACTCCACAA
Seq A exon
GTAACTCTTCCCTTTGCTCCTGGTACACCCAGGGACCCCAAGGGGACAGTTCCAGCAGTTCTCCATTCACTGGCAGGGAGTTGGGGGATTGGGGTTTGTGCAGGGTGGATGAGGAGTCTCATGTCCACCACGGGTGTTTGGACTGTGGTTTGCAAGGAGCTGGGCCGGCACCTGCAGGGATTCTGTCAGTGCACAGGGATCAGATGGTCTCCCCATTTCTCTTCTTCTCCCTTCAGCTGCAGCAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGGGATCATGTTGGTCTCCCCATTTCTCTTTCTTCTCCCTTCAG
Seq C2 exon
CTGCAGCAATGAACTTGGACCGGATCGGCGAGCACGCGGAGGCCATGTTTGGTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAATGTACGGCTGGACT
R:
CCACACCAAACATGGCCTCC
Band lengths:
183-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]