GgaINT0141525 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4578059-4578484:-
Coord C1 exon
chr26:4578355-4578484
Coord A exon
chr26:4578117-4578354
Coord C2 exon
chr26:4578059-4578116
Length
238 bp
Sequences
Splice sites
5' ss Seq
CAAGTAACT
5' ss Score
4.45
3' ss Seq
TCTCTTTCTTCTCCCTTCAGCTG
3' ss Score
11.77
Exon sequences
Seq C1 exon
TTCATCCTGAATGTACGGCTGGACTACAGGATTTCCTACCTGCTTTCCGTCTTCAAGAAAGAGTTTGTGGAAGTCTACCCCATGCAGGACAGTGCGGCTGATGGGACGGCTCCAGCCTTTGACTCCACAA
Seq A exon
GTAACTCTTCCCTTTGCTCCTGGTACACCCAGGGACCCCAAGGGGACAGTTCCAGCAGTTCTCCATTCACTGGCAGGGAGTTGGGGGATTGGGGTTTGTGCAGGGTGGATGAGGAGTCTCATGTCCACCACGGGTGTTTGGACTGTGGTTTGCAAGGAGCTGGGCCGGCACCTGCAGGGATTCTGTCAGTGCACAGGGATCATGTTGGTCTCCCCATTTCTCTTTCTTCTCCCTTCAG
Seq C2 exon
CTGCAGCAATGAACTTGGACCGGATCGGCGAGCACGCGGAGGCCATGTTTGGTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCCTGAATGTACGGCTGG
R:
CCCACACCAAACATGGCCTC
Band lengths:
188-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]