GgaINT0141535 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4453658-4454009:-
Coord C1 exon
chr26:4453884-4454009
Coord A exon
chr26:4453779-4453883
Coord C2 exon
chr26:4453658-4453778
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTGCCCATTCTCTCCTTCAGACC
3' ss Score
10.08
Exon sequences
Seq C1 exon
ATGTGCAAAAAGCGAGAGAAGCGCCTTCCAGACCCCACTCTGGAGAAGTACGTGCTGACGGTGGTGCTGGACACCATCAATGCATTCTTCAGCTCTCCATTCTCAGAGAACAGCACCTCACTGCAG
Seq A exon
GTAATGGGGTGTTGCATAGCCATGCCATGCATGGAGCGAGCAAAGGGCTCACCCTTTGGGAAAAGGAGTCTGTACTGATACAGAGCTGCCCATTCTCTCCTTCAG
Seq C2 exon
ACCCACCAGACCATTGTGGTGCAGCTTCTCCAGTCCACCATGAGGCTGTTGGAGTGCTCCTGGCTGCAGCAGCAGCACAAGAGCTCAGTGGAGGCCTGCATCCGAACGCTGGCGATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGCGAGAGAAGCG
R:
AACCATCGCCAGCGTTCG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]