GgaINT0141557 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4562561-4563627:-
Coord C1 exon
chr26:4563462-4563627
Coord A exon
chr26:4562722-4563461
Coord C2 exon
chr26:4562561-4562721
Length
740 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACTTGACTGCCTTTCCCAGGAC
3' ss Score
7.18
Exon sequences
Seq C1 exon
GAGTCCTTGTTTCCTGCTCGGGTTGTCTACGACCTCCTCTTTTTCTTCATTGTCATTATCATTGTCCTGAACCTCATCTTTGGGGTCATTATTGACACCTTTGCTGATCTGAGGAGCGAGAAGCAAAAGAAAGAAGAAATACTGAAGACCACTTGTTTCATATGTG
Seq A exon
GTGAGTGCAAGGTCCTTGGCTCTGCATGTACAGGAATTGCCCCCACATTGTTCCTCTTCTTAAGGTCAACCTATGACACAAGGGAAGAAGTGAAGCTTCAGCTGGTTTTTAGATTTCGTTTGATTCACAGCACAACTTAAATCTGTTCACCAGTGGGTCACTACAGCGTGAGGGGACTTAAACAAGGACACAGACCGAGAGGGGAAATTATCCCTATTCCTACTGGCCTTCTGTTAATGAGGTGTTAAACTGAATGCTGCATTGTGGTGTTCTTGTCGCTGTGCATCACTCCTGGGACCAGCATTTATCAACTGGAAAAAAAGCATATTGCTAAGGAAATAGAATAGAGGAAAATGTTCCAGAATGCTTTTGGTCATAGGAAGGCATCCAAAAAACCAACCCAACCATAAATATAGCTGTTGTTTTGTGTTTTTGTTTTCCTTGTAAGATCCAGTGGGTGCATTTTGTTCTTTTAGATTATATAGGCAGGAAGCATAGCTAGTAGAACTTTAAATAGAAGCCTCCTGAATACACAACTGGGTTATTTTCCCTCTGCTTTGGATTCTTGTTGTGTGCTAAATGCCAACTAATTATTAAAAGCACTTCTTGAAAGTCACACCTGGGACAGGAGGCAATTATCTGTACTTCCTTTCACATTTGTTTGCTTGCTCACTTCTTACCTTGGCCTCCCCTCCTTTTCTCCTCTCTCCACCTTCTCCACACTTGACTGCCTTTCCCAG
Seq C2 exon
GACTCGAACGGGACAAGTTTGACAACAAGACAGTGTCCTTTGAGGAGCATATTAAGTACGAGCACAACATGTGGAACTACTTGTACTTCATAGTGCTGGTGCGAGTGAAGAACAAGACAGACTACACAGGTCCTGAGAGCTACGTGGCTCAGATGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.8=51.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTGTTTCCTGCTCGG
R:
TTTATCATCTGAGCCACGTAGC
Band lengths:
326-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]