RnoINT0076777 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5708886-5709648:+
Coord C1 exon
chr20:5708886-5709051
Coord A exon
chr20:5709052-5709487
Coord C2 exon
chr20:5709488-5709648
Length
436 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GGCCCTCCTTCTGCCCCCAGGTC
3' ss Score
12.2
Exon sequences
Seq C1 exon
GAGTCGCTCTTCCCAGCCAGGGTGGTGTACGACCTCCTGTTCTTCTTCATTGTCATCATTATTGTCCTGAACCTCATCTTTGGGGTGATCATCGACACCTTCGCCGACCTGCGCAGCGAGAAGCAGAAGAAAGAGGAAATCCTCAAGACCACGTGCTTCATCTGTG
Seq A exon
GTGAGGCCCACTTCCTCACTTGGCTGTTTCCGACTGCGCGGCCTGAGGCTTCTAAGCCGTAGCACCCAGTCTTACCCTTGCTGACCTGACCTATGCTGGGATCAGCAGGACCTGGGCAGTCACTGCTTCGTGCCACTGTGGCCTCCAGGAGAGGAACCTGAGGCCACTGTGGCCTCAGACTTCTGGTTTTGGCCCATTTTGCTCCTTCTGAACCTAGTCATGTCCTCACCAGTGGCCCGCCTTCAGGACATGCCATTGACCCAGCTAGTCCTGTCACCACTGGGCTCAGGCAATCCTGATGTTCCCAGAGTCCCTAGTGCTCTGCAGGAGGGCTGTAGCCAGGTACCACTAAGCAGTGGGAGCTTGAATATCGACCCAAATCGCCCAGGGGAGCTATTAGAAGCAGTCCCCATGGTGGCCCTCCTTCTGCCCCCAG
Seq C2 exon
GTCTGGAGAGGGACAAGTTTGACAACAAGACAGTGTCCTTTGAAGAGCACATCAAACTGGAGCACAACATGTGGAACTACCTGTACTTCATTGTGCTGGTCCGTGTCAAGAACAAGACAGACTACACGGGCCCCGAGAGCTACGTGGCTCAGATGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.7=51.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGCTCTTCCCAGCCAG
R:
TTGATCATCTGAGCCACGTAGC
Band lengths:
326-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]