GgaINT0141659 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1739171-1740116:-
Coord C1 exon
chr26:1739994-1740116
Coord A exon
chr26:1739339-1739993
Coord C2 exon
chr26:1739171-1739338
Length
655 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
CTCTGACTGCTCTCTTGCAGGAT
3' ss Score
10.78
Exon sequences
Seq C1 exon
CTATGAAGATTTCTACCTCTCTTGCTCCATCACGCACGGTGGTAAGGAGCTGTGCAGCCCCCTGCACACCAGAAAGGCCCACGTCTACAAGTACCTTTTCCACCTCATCATATGGGACCAGCA
Seq A exon
GTAAGGCAGCGCCCTGGCCGCGGGGTGGGCATGGGTACCTAGTGCCGTCCCCAGCCGTACTGCCTTCTCCAGCAGCTCCCCTCTGTGCCTCTCCCCAGTTTTCGGATTATGGAAGCTCTTATGTCATCCCCAGGAATAGCACCTGCCCCCTGGCGCCAGTCCCCCACCTCCTTTTTGCACCCGGGAAAGGGGATCTGCTCCCAAAATAGCCCTGGGAGAAGGCAGGGAGGCTGTGCCAAGCCCTCGCCATGCCTGGTATTTGCAGAGAGGTGGGGATGGGAACGGGATAATTTTAGAAGGTGCCTGTGCCCCTGAAGGACGTGCGCCCAGTGGCAGCCGTCCCCTCTGCCCGTCTCACCCGTCCCTTGCCCACCCTGTGGGCAGGATGCCCTGAGCTCCTTGAGGACCCCCACACTGACAGGGAGAAGCTGGGACGAGGTCAGTGCTCAGGGTCCCCCCATCACCTACCCGGGGCAAAGCAGGGGCACGGGAGCAGCCTGCTCTGTCCAACATGGGGGGCGGTATGCCCATGACGTAAGGGTGCACGTTGCACCCCCGGTGCCAGCAGCGAAGGCATTTGCTGAGCTCTGTTGGCATTCCGAGGTGGGGGGCCGGGGCTGACCCGTGCCGTGGGGCTCTGACTGCTCTCTTGCAG
Seq C2 exon
GATCTGCTTCCCCGTCCAGGTGAACCGACTGCCGCGGGAGACGCTGCTCAGCGTCACGCTCTTCGCCGTGCCCGTCCCCCCCCCGGGGAGCTCCTCCGACACCAACAAGCAGCGGCGGGTCCCTGAGGCTCTGGGCTGGGTCACCACTCCGCTCTTCAACTTCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.1=97.6)
A:
NA
C2:
PF0079219=PI3K_C2=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATTTCTACCTCTCTTGCTCCA
R:
GCCTGAAGTTGAAGAGCGGAG
Band lengths:
286-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]