HsaINT0124948 @ hg38
Intron Retention
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204449850-204454791:-
Coord C1 exon
chr1:204454669-204454791
Coord A exon
chr1:204450018-204454668
Coord C2 exon
chr1:204449850-204450017
Length
4651 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
TGACTTCCTGTCCTCCATAGGAT
3' ss Score
12.05
Exon sequences
Seq C1 exon
CTATGAAGATTTCTACCTCTCCTGCTCCCTCAGCCATGGCGGCAAGGAGCTGTGCAGCCCCCTGCAGACCCGAAGAGCTCACTTCTCCAAGTACCTCTTCCACCTCATCGTCTGGGACCAGCA
Seq A exon
GTAAGCCCTTCCCCCAGGCTTCAGTGCCCAGGCCACTGTAGACCTGCTCAGCCTCTGAAATATCCCTGGGGCCAGATAACTAGTCCAGGACTAATGATAAAACCAGGCTCCTTGTTAACCCTAACTGGACAAGTCATTCAACCTCTTGAGTCTCCACTTCCCTGACTCTTTTTTTTTTTTTTTTTTTGAGAGGCAGCCTCGCTTTGTTGCCCAAGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCATTCTTCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGCAGAGATGGGGTTTCCATGTGTTAGCTAGGATAGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCTCCACTTCCCTGACTCTTAAAGGAGCCAAGTATAATTACCACTTCTCAAGTTGTCATGAGGATCCAATGAGAAGTATCTATAAAGGCTCTTTGTAAACCATAAAAAACATATAAATTTTAGTTGTTGACCAGGCGCGGTGGCTTACGCTTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGCAGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAAAAATACAAAATAGCCGGGCATGGTGGCGCATGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGTAGTGAGCTGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAATTCTGTCTCAAAAAAAAAAAAATTAAATGTTAGTTGTTAATTTTAATAATACTTTATTTTTTGATCTTGTCTCCCTTAAAGAGTTTAACTAGTTGGAGGGCTTCTCATCCTCTCCCTTCTTCCCTCAGTTCCTGTAGACTATGGAGAGGAGACTGTGCTTTTCCCTTTATATATAGAGAAGGGAGGGTTGTCTAGAGAAAGAATATTGAGCTTGGATTCCCAGGAGTGAGCCTCTATTTCTAGCTCTGTCTCGAATACTACTTTCTCTCTATTCTTTCTGTGCCTCATTTTTTCAAACTGAGAAATGGGGACATTGGTTTCACTCAGAGGCAGTTATGGCGTCGAGATGAGATAGGTGGGTTATAAATATAAATATGAAACCAAAAGCACAAGGTAATATTAATCACCACATGTAAACAATAATTTGGTGTCGGGAAGGTAGGCGTCAGCCAAGCAAAGCAGGAAGGAAACGGAGGAGAGGGTGCCTTGCTTGAATGGGGGCACCGCAGGGGTTTTCCTGCCCTGTGCTTCATCTGTGCTATGCTCTACCTTCCTTCCAGTCAGTCAGAAAATCCCCTGTTTGCTGCCCCCGGCTTTGCTTCCCCACACTGACTATATTAGAGTCCTCATTTGCAGAGCAGCACTGCAAGCTAAGTATTTGTAGCACAGATTAAAGAGACTGAGGAGGGTCCTGGGGAGGCCGAGGATGCAAAATAGGTAGATGAAGAATCTGGAGATGCTGGAAGAGGTGGGTCCTTTTACAGATGGACAACTGGGAAAATGGACCCTTTCTCATGCCCTTCACACTTAGGTAATTCTTAGAGCAATAAAGGTGTATATGGCTGGGCACGATGGCTCACACCTGTAGTCTCACCGTACTTTGGGAGGACAAGGCGGGATAATCACTTGAGATCAGGAATTTGAGACCAGCCTGGGCAACACAAAGAGGCCTTATCTCTACTAAAAAATTATTTTAAATGAGCTGAGTGTGGTGGCGTGCATCTGTAGTCCTAGCTACTTAAGAGGCTGAGGTGGGAGAGTCACTTGAGCCTGGGAGGTCGAGGCTGCAGTGAGCCATGATCACACCACTGCACTATAGCCTGGGCAACAGAGTGAGACCCTATCTTAAAAAAAAAAAAAAAAAAAAAGGACATGGGGTGTGCATTAAAGGTCCTCAAGCAAACAACTGCCAGGACAGGAGAAACTCCTTGCAGGCAGAGGATAGCTGCATTAAATGGCCCTTGAGTTCCACCATTCCCTTGGGATTTTTTGGTCACAATTACTGCTGCTGTCAAGAGAAGGGGTGCCAGCCTGGGCAACAAGGGAGACCCAATCTCTACAAAAAATACAAAAAATTAGCCAAGTGTGGTGGCATACACCTGTGGTTCCAGCTACTTAGGAGGCTGAGGTGGGAGAATCACTTGAGCCTGGGAGGTCAAGGCTGCAGTGAGTATCCAGCCTCGGCAACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGGTGCTGCACAGTGTTCTGGCCCAGGAGGAACTTTAAAAAATTGGCCTTAAACCCTTTACTCATACAGTATCAGAGGTAGAGAGGCAGCCCAGCCTGCCCCATGAGTTTCATTTTGTTCCCTGAGATCCCCACCTTGAATTTTAAAGGGGCAGTCCCCTGCCTAGCGCCTTGTGAAGGGCACTATCTTGCACTGTCCATCCAGAAGCCCCGAATGAGACTTCTTGGCCCTTCATGGTCAAGACCAGGACATTTGGGGGAAGGCGTGCCAGCGTTCAGAGGACAGTCTTTGGGCCAGTCATTCTCTCCTTCCTACTGTAGTTGCAGCCTGGGGCAGGTCTTTCAACCTAGAATGGTAGCGATAATAGGGCCTACCCTACAGGATTGTTTGAGGAGCAGTTAGGACACTGTAAATAAAGTACTTGGCACAGGCTTCTTAGCTGGGGAGCCCTCTTGGTTTTGGTTTCTCTGTTCCAAGTGACTGACAGACTGGCTGATACATGGGGATACGTGCGCATGAAAATACTATCTGTATAAGCCAGTGCCAGTGCAGTAACCACAGCATCACATAGCAAAAAGTACACAGTCTGCACACACATCATGCAAGTGAAGCTATGTTCCCCTTTTCCCTGATGAGAAACTGAGGCACAGAGATGGGAATTAAGTTGCCCAGGATTGTGAGTGGCAGAACCGGGACTGGAGCCAACCAGCACATTCCAGGAATCCTTCCTGGAGGAGGCAGCCTGTGTGATATGAGGTTGTTGAATGGGCTGCAGGAAGGAGAGGGGCTTCTCAGGGAGGAAGGTAAGGGCTGCAGCCAACATAATGGTTATCCTGACCAGCCCTGGGTGAAGATCTGTGGGAGAGGTTGTGGAATACCAGATATACCCAAGGACTGAAGGGAAGAGGGCCTTGGCTGGCTCTGGTTTCACTCATAAAGTCTTCTCACTCCCCTTTTCCTTAAGACACGAAGCTGGAAGCTTCTTCCTTGGGTGAAAAGAAAGGGCTCAGGACCAGCTCCCTCTCCCCTTTGCTATGGGGTCAGCTGATTCTCTGCCCCACTGTAGCGGTCCAGGGATCAGCTAACTCTCAAAATAGGCTCAGCAGCCGTGCTTTGTCACCTCCAGCCAAGCCCTGGCCTGGCATGTCTGCTGGCTGCTGGAGGGGCCCTAATTATAGCTGTGGGCCCCCAGGGTAGAGGCAGCTGGGACAGAGCAGGGCTCTGCCAGTCTGTGGTGGGCTGGAGGGAGTGCCTCACTTAGGTGGAGATTCCTCTGGAGGACAGCGGTGGAGGCAGGCTGCTTTATCATGAAACTGCCAACCTTGGGGGTGGCCGCCCTGCCTCTGCGCCCTCTGGCATAGAAGTTGCTGGGCCCTGGGCTGGCCAGGAGGGTGTGACAGTATGGACTTTGGCCCAGGGACAGCTTCCCCGAAAGGTAACGTGGGTCCTCCCTGCCTTTCCACAGCTCCCCTCCCCTGTGTACTTCACCCCACCCAGCAGTTCCTTATCCTGAGCTTAGAGGGAGTGGCTAGGTGTGATTCAGACTGAGGGACCTGGAGAGAACTTATGGGCTTGAATAGTGGTGGGGCTTATGTGTCTCAGTTCTCTTGGCCCTGCCATTGGCTTTCTCACCACTGGGGTACTTGGAGAAACCCCTCCTCTTTGTCCCTTTGGCTTTGAAGCTGTTTGGGGGTGGGGGTGAGAAAAACCCAGTGTGTGTCCCTGGGGCTAGGTGAAGGGGACTCCTATGAGGACAAGTGAGAGGGCTGTGGGGGAGGGTGAACCGAGGGCAGAGAACATGGTGCTTCTTCCTGGTGGCTCTCAGCAGCAAGAAGTGGGGGAGGGATGGAGACTGTCAAATGGAAAAGGAGGACAAAAGGAGTAGCTTTGCGGACCCTCTGCGGAAATCCTAAAACAAGGAAAGGAGCAAGGCTGACAACATGGGACGTGTCATCACCTGAACTCCGAGGTGGCTCTGCTAAGCAAGTTCTGTCCAGGCACCACGGGTAGCTTCAAAATCGGGATGTTCGCCTCACTCTACTGCAAAGCTCCAAGGACACCACATTGTGCTTCTGGGAACATCCAGTGGGGGTTTTGCCTAGTTTGGGACCTCTCCTGGTTCTGCAGGAGGAGGGCTTCCTCAGGGAGTATGTCTGAACCCTGAGAGGGAGGCTGTATCCTCAGCCTCAGCCTCAGCCTGACTTCCTGGGCCACCTGTTGCTTGAAGCCACAGGAGTGGCCCCTCCTAATTTGACTTCCTGTCCTCCATAG
Seq C2 exon
GATCTGCTTCCCAGTGCAGGTGAACCGGCTGCCTCGGGAGACACTGCTGTGTGCCACTCTCTATGCTCTGCCCATCCCCCCACCGGGGAGCTCCTCAGAGGCCAATAAGCAGCGGCGGGTGCCTGAAGCCCTGGGCTGGGTCACTACCCCACTCTTCAACTTCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056:ENST00000367187:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.1=97.6)
A:
NA
C2:
PF0079219=PI3K_C2=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development