GgaINT0142523 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1595259-1595686:+
Coord C1 exon
chr27:1595259-1595484
Coord A exon
chr27:1595485-1595559
Coord C2 exon
chr27:1595560-1595686
Length
75 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GATGTTGCTGGGGTCTGCAGGTC
3' ss Score
6.19
Exon sequences
Seq C1 exon
AGAGGAGGGTTCTGCAGAAATGGTGGTGACGGTGCCCGATGCCATCACAGAATGGAAAGCTGAGATGTTCTGCACAGCACCCGTGGGCTTGGGGCTAGCCCCTGCCACCACCCTCACAGTCTTCAAGCCCTTCTTCGTGGACCTGGCGCTGCCCTATGCTGTGATCCGTGGTGAAGCCTTCTCTCTTGTTGCCACCGTCTTCAATTATCTGCGGCAGTGCCTACGG
Seq A exon
GTGAGTGTGGTGGGCAGGGGGCCGGGGGCTGGGGGCTGTGCCCTGGTAGGTGGCTGATGTTGCTGGGGTCTGCAG
Seq C2 exon
GTCCGGGTGACACTGGCGGACTCGGCAGAGCTGGAGGTGTCAGAGGTTGCAGGTGCGATTTACAGCATCTGCGTCTGTGCGGATGAAGCCAAGACGTTCCGGTGGGATGTGAAGGCTACCAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.3=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCCCTTCTTCGTGGAC
R:
ACGCAGATGCTGTAAATCGCA
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]