GgaINT0142524 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1689553-1690030:+
Coord C1 exon
chr27:1689553-1689679
Coord A exon
chr27:1689680-1689908
Coord C2 exon
chr27:1689909-1690030
Length
229 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
ATGTCCCATTGGCATTGCAGGAG
3' ss Score
6.23
Exon sequences
Seq C1 exon
GTCCGGGTGACACTGGCGGACTCGGCAGAGCTGGAGGTGTCAGAGGTTGCAGGTGCGATTTACAGCATCTGCGTCTGTGCGGATGAAGCCAAGACGTTCCGGTGGGATGTGAAGGCTACCAACCTGG
Seq A exon
GTATGAGTGCATGGATCCCCTGCCCTGCTACTTGGAGACCACCTGACACAGTGGGGTGGACAGGGAGGGCGTCAGCAAACATGATGCCATCGGCAATGCTCTTCTCTGCTCCATTTATCCCTTCCCCGTCACCTCCCATCCCAACCCAGCCAGTCCCATTCAAAGCCCATGGGGCTGCAGTGTGGGCTGGGGGCCTCTATGGTGACTGAATGTCCCATTGGCATTGCAG
Seq C2 exon
GAGAGGTGAACATCACCATCAGCACCGAGGCCATAAGCTCTGAGGAGCTCTGTGGCAATGAGAAGCCTGTGGTGCCAGCCCAGGGGCGTGTAGACACTGTGATAAAGCCATTGCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGACACTGGCGGACTC
R:
GCAATGGCTTTATCACAGTGTCT
Band lengths:
237-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]