GgaINT0142530 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1597142-1597456:+
Coord C1 exon
chr27:1597142-1597298
Coord A exon
chr27:1597299-1597381
Coord C2 exon
chr27:1597382-1597456
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GTCTCACTGTCCCTTTGCAGGGT
3' ss Score
11.58
Exon sequences
Seq C1 exon
GTTGACAGCATTTGTCCTCAAGTCTTTTGGGCAAGCGAGAGCCTTCGTGGCCATCGAGGAGCGGCACATCACGGACGCGCAGCACTGGTTGCAGAGGCAGCAGCAGGAGTCGGGATGCTTCCGCAGCGTGGGCAAGCTCTTCAATAACGCCCTGCAG
Seq A exon
GTGGGGATGGGGTGGGATGGGGTGACGTGGGGACACGTGGCTGGAGGTGGCACGGACAAAGCTGTCTCACTGTCCCTTTGCAG
Seq C2 exon
GGTGGTGTATCGGATGAGCTCTCGCTGTCAGCTTATGTCACAGCTGCGCTGCTGGAGCTGGGGCTGCCCCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTTTGGGCAAGCGAGAG
R:
GCTGTGACATAAGCTGACAGC
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]