GgaINT0143065 @ galGal4
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2338753-2339324:+
Coord C1 exon
chr27:2338753-2338802
Coord A exon
chr27:2338803-2339263
Coord C2 exon
chr27:2339264-2339324
Length
461 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTGTCCTTTATTTATTTCAGTGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTGGCTGTGGTGCTGGAAATACAGTCTTCCCAATTTTACAAACCAACAA
Seq A exon
GTAAGTAGTTCTCATTAAGTTTTTACCTGTGTGATAAAGCAGCCCCTGAAAAACAATAGGGAAAGCTGTTGCATATTTTCTTAGTTTAGACAATCTCATGTTGAAAGGCCAGATGTAACTGACAAACTATACATGTCTTCAAATAATTGTGTTTTGAGCCTGGAGGTCTTTGGCCTTAAAATGCAAGAATACGTGTCTCTTTGTAAAGCATTTTCATACAGGCTTTAGTATCTCTCCTGAAGTAAAAGTAAGCAGTCAGTTCCATATGAGAACAACTGAGACATAAAAGAGCAAAGTGATGAACCAGATTTTGCACAGCAGATAAGAGACAGACAGACTGACTGAGACTAAAGGCCAGGATTTCAGACTTTCAATTTTGTGCTCCGTGTGTTTGAGACACTTTTGTGATTCCTGTGGAACATCTTTCTATACGTGATGATTGTGTCCTTTATTTATTTCAG
Seq C2 exon
TGACCCAGGCCTTTTTGTTTATTGCTGTGACTTTTCTACTACAGCTGTGGATCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.4=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]