BtaINT0092010 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47515904-47516349:+
Coord C1 exon
chr19:47515904-47515953
Coord A exon
chr19:47515954-47516288
Coord C2 exon
chr19:47516289-47516349
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTTTTTCCTGCCCATTTCAGTGA
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGTGGGAAACACAGTCTTCCCAATTCTACAAACTAACAA
Seq A exon
GTAAGGTTTGTTGTAAAGTCTAACAGCATGTCAGCAAAGAAAAAAGTGATGCACTGTTGTTTCTTGGAACTCTTACTATATTCGAATGGTAACAGCAATTATGGGGAACTGGGTTACAGGAGATTAGATGTCTACACTACCCATTTATGGATTGTTTTGACTTAATTGACTTATAAGTTATCTTTGTCATCAGGGAAAGTAGTGAGTGTTAAACCTGTTACTTTGTTAACATGTGGTGCCTTTGATATTTTAACTCTGCTGCATAGTATAGAGAATAGACATAATCCAGTTTGTAATCTAATGCCTCTGCTGTGTTTTTTTCCTGCCCATTTCAG
Seq C2 exon
TGACCCAAGCCTCTTTGTGTACTGTTGTGATTTTTCTTCCACAGCTGTAGAACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.5=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development