BtaEX0021999 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47514461-47516349:+
Coord C1 exon
chr19:47514461-47514816
Coord A exon
chr19:47515904-47515953
Coord C2 exon
chr19:47516289-47516349
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTCTGATTTCTGTCTACAGGTT
3' ss Score
11.36
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
Seq A exon
GTTGGTTGTGGTGTGGGAAACACAGTCTTCCCAATTCTACAAACTAACAA
Seq C2 exon
TGACCCAAGCCTCTTTGTGTACTGTTGTGATTTTTCTTCCACAGCTGTAGAACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(15.4=24.4)
A:
PF134891=Methyltransf_23=FE(8.5=100)
C2:
PF134891=Methyltransf_23=FE(10.6=100)
Main Skipping Isoform:
ENSBTAT00000012443fB4226
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGAAGCTCCATCACCTG
R:
GGACCAGTTCTACAGCTGTGG
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development