RnoEX0054026 @ rn6
Exon Skipping
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93356237-93359787:+
Coord C1 exon
chr10:93356237-93356586
Coord A exon
chr10:93357974-93358023
Coord C2 exon
chr10:93359727-93359787
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTGATTCCTTTCTGTTGCAGGTT
3' ss Score
11.99
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAAAGTTCACGAAAATGGGTTTTTCAAGGACAGACACTGGCTTTTTACTGAGTTCCCTGAACTGGCACCTAGCCACGATCACCTAGTGAATTTGCACTTGGAGAAACAGAAGAATGAAGTCTCCAAACCTAGAAGCAGTGAGGATGGACCTGGCTTGGCAGCAGAACAACACAAGCGTCCTTGTACCAGCCATGGATGTGAAACTCGGGTGCCTCCCGTGGAAGAGCCGGTGACTCAGAAGCTCACCCACCTGGAAATTTGTGCTGACGACTTTCCTGGCTCCTCTGCTACCTACCGAATACTTGAG
Seq A exon
GTTGGCTGTGGTGTAGGAAACACAGTCTTTCCGATTTTACAAACTAACAA
Seq C2 exon
TAACCCAGACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACAGCTATTGAACTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(15.4=24.8)
A:
PF134891=Methyltransf_23=FE(8.5=100)
C2:
PF134891=Methyltransf_23=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTCAGAAGCTCACCCAC
R:
ACCAGTTCAATAGCTGTGGCA
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]