DreEX0046127 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19524578-19527063:+
Coord C1 exon
chr3:19524578-19524819
Coord A exon
chr3:19526878-19526927
Coord C2 exon
chr3:19527003-19527063
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGGGGGTCTTCAGGTG
3' ss Score
7.23
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGGAGTTTGACGACAGGGCCAATGAATACTGGAATGACTTTTACACCATTCACGAGAACCGCTTCTTCAAGGATCGTCACTGGCTCTTTACAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAG
Seq A exon
GTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAA
Seq C2 exon
TGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(21.3=53.1)
A:
PF082427=Methyltransf_12=FE(15.4=100)
C2:
PF082427=Methyltransf_12=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCCTGGAACACATGT
R:
AGCTGTGCTGGAGAAATCACA
Band lengths:
144-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]