GgaINT0143090 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1348429-1348671:+
Coord C1 exon
chr27:1348429-1348497
Coord A exon
chr27:1348498-1348590
Coord C2 exon
chr27:1348591-1348671
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGCCTGGGGTGTCTCCTCAGATC
3' ss Score
8.8
Exon sequences
Seq C1 exon
CAACTCAATGCCATCATCGCCGCCTCCATGTCCCTCAAGTCCTCCAGCAAGCTGCGCAACATCCTCGAG
Seq A exon
GTGAGGGGCGTGAGGGGCAGCCCCGATGGGGGACGCTGGGGGCATGGGGGGCTGCTGGGGTGTGATGCCGACCTGCCTGGGGTGTCTCCTCAG
Seq C2 exon
ATCGTCCTGGCCTTTGGGAACTACATGAACAGCAGCAAGCGTGGGGCAGCCTACGGCTTCCGCCTGCAGAGCCTCGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(6.7=100)
A:
NA
C2:
PF0218118=FH2=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAATGCCATCATCGCCG
R:
CGCATCGAGGCTCTGCAG
Band lengths:
149-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]