RnoINT0061617 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91278283-91278992:+
Coord C1 exon
chr10:91278283-91278351
Coord A exon
chr10:91278352-91278911
Coord C2 exon
chr10:91278912-91278992
Length
560 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTTCTCTGCCTCTCCCAGATC
3' ss Score
11.05
Exon sequences
Seq C1 exon
CAACTGAACGCCATCATTGCAGCCTCTATATCCATCAAGTCCTCTGACAAGCTTCGCCAGATCCTAGAG
Seq A exon
GTGAGAGCCCAGGGCAAGAGACTGGGAAGCAGGGCCTGACCTTGCCTCGTTTAGGTAGCGTAAAAAGGGAGACCCAGGCCCTGTCCACCTGGGTAATGCGCCCATTTCTCACGCGCATGTGCTGGTAGACAAGCTAAGGTGGGAGGTGGAGATGGGCAAAGGCCACGGCAGCCGTGCCTGTGACCCTGCATCTGAGCTCCTTCTCCGGGTCTCAGTCCCTCTGGGGATTCCTTTGTGAGTAACTGGGTAACTGTTCAGTGGAGTGTCTGCAGACAAGAATACATGGCTGTCAGGGAATTGAGGATGGGATGGTGGCAAGCCAGTTTGGGGTGGACTAACGAAGGATAAAATCTGAGCACACTACTGGTGTTTAGAGTGCACACGATATACACATTTACAGGTTGTGTGTGCATTGGAACCAAAGGGCCCATTCATGAGGGGCTAAGTGTGAAGGCTGGTTTCTGGTGACCTTCCTTCCTGAGTAGTATATATTCTTCAAGGTTTTTTTTTTTTAAATCTCAGCCTGGATCTCATTGAGTCTTTTTCTCTGCCTCTCCCAG
Seq C2 exon
ATCGTCCTGGCTTTTGGCAACTACATGAACAGTAGTAAGCGTGGGGCAGCCTATGGTTTCCGACTTCAGAGTCTGGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(6.0=100)
A:
NA
C2:
PF0218118=FH2=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]