GgaINT0143129 @ galGal3
Intron Retention
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4586962-4591848:+
Coord C1 exon
chr27:4586962-4587090
Coord A exon
chr27:4587091-4591765
Coord C2 exon
chr27:4591766-4591848
Length
4675 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
Exon sequences
Seq C1 exon
GCCAACTTTGAGAAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
Seq A exon
GTCAGAATACCGGGGGTGGGTCAGCACTTGAGCAGCAGGTTCTCCTTCTTCAAACTACCATTTTTATTCTCAAATATATTTTTAGTTGTTGTTTTGGACAGCAGATTCATCTTCCTGCTTTATCTAAGAAAGCTTCTCAAATTACGTTCCATTTCTCATGCAGTACACATAGCCACTCATGATCTACCTCCTTAATATTTTTTTTAACTTAAACAATGATTTCACTAAAAACATGCAGGATAAAGTACTGGTAGTTCTTAAAGCATGTTGACAGAACAGAAATTTGGTGCTACAGTGAGCAAGAGTTTCTTCGTTGAGTGTACAGATAAGCAGTCGTGCCTCACACAGAGGTATTACAATCAAACTTCAGTATTTGAAGTGTTATATGGAGATTGTTCGTTAGGTCATAAGACAAAGTTCATTGAAGTTAATGGATTTATTTTTAACATGTTGAGCCTTTGATCAAGCCCCCAAAACTTTTAGAGATAAGTTCTAGAGAAAAAGAACATCTAAAATCATTAACGTTTTGTCAAATGAGAGCTGGGTCAGAAAGGGACATTACATCTCTGGTGTCATTCATGATATAGTGACCTAAAGCCTGAATAAGAGAAGACTTGATCCTTCATCTTAAAGCATAAGTATCTCAAAACCTAGAGAGTTTTCTCGAAGAGCTCCTGTGTGTTTTTTTTTTTTTTTTTAGAGCAGCAAAGACATGGTGTTTGCTGATAACATGTCCGGTTTCCTCTAATCAACAATTTGATGAAAGAGTTCTTAATGGATGTGGCTCCTGGTGTTCACAAAGGCTGTGATCAAGAGGAGTTGGGCTCCTGCAAACTTCAGACCGTTTATCTAACGGTTTTTTTCTTGGCTCAGGATGCTGCCTGTTCAGGCATTAAGATTATTCCTGTGCCAAAACAAACCTTCCTTGCTGCTGATGTATATGCTGCCCGTGTGATCTGTTGGTTGCTCATGGGATTTGTTCAATACTAAAAGACTCGTCTTCGAGTGTTGAATGCCCACCTGAAGTTGCTGTGAGTCTCTTTGGACAAACAGCACGAACCTGATAATCTGTTACATAGCTGCATTCAGATGCTGATGAGCTCTCCTGTTCTAACTGAATATTGAGTAAAACCTCGTGCAACTTGTGCAGTGCACTTGCATTAATTGCACTCACCTAGTGAGAGCTGCCTACTGCCTTTCTTCAAGGACAGTATGAACATACTAACATTAATTTCCTACTTAAAAATCTGTCAGATCACTTGCATAAGGAGTCTTTGTGTCAGACTTCAATGGACTGGCCAGTGAAGGTTTAGATATTTATCTTCCTGTTTTCTGTAATAATAAAATGTCACATACTGCTATAAACAGAAGCAAACCGAGCAGTTCATGTGCGAAGTTCACTGAAGGTGTCAAAACTGACTATTTCTTTTCACACTGTAATCAGAAAGCTATGTGAGGTCCTGGCTAGCCCAGGACTTCTGAGCCTTGTGCAGTCCTACATCTCCTCAAACACTGAATGCTTTACTTTGTCATGCTGTCATTTGCACAGTACCTTCAACACTTGAAGACTTTAATAAGTTGTAATCAAGATTGTGCTATTCATAGAAACAAGTTGCACAAGAAATGGCTTGCTACTTAGTCTTTTAGATTTAGCATTTACTGTCTGGAGTTTCTGCAGTGAGGGTGGGAGGTTGTGAAATTCTTTCAGTTCTTGTTATGACCATTCTTGTTAGCGTAGCCGTTTCTTGTTTCAACACACCATGTTGATGATTATGCTCCTTTTCTTAGTCTTCTTGTCTTTGCTTATGAAGAACAGTATGGGCTGGAGAGATTTCTCTGAAAGTTTTGCCATAAGCATCCTAAAGTGTGAGCATAAAAGAAGACTGGAAAAGTAACGGTTAATGGCATGCAGTCCCCGTCTCTCCTCCCTCTAACTCTTCTCATCATCTGCTTTTCTTCTGTTTGTTTCGCATCTGTCCTTTCTGTCTGGGCTCTGGGTCAATAAGCTAGATGGTGAAATTAATCCCTTTTAGTTCTTGTGAAAATTGATTTTTGTTTCGATTGTGACCTGGAAGGGGCTTGAATTGTATGGTGTTGTGGGCAGCAATCCAGAGCCAGCACAGAGCAGAACCTGAATCAAGAGCATGGAAAACTAAACTTTTCTCAGATCTTGAGACTGAAGGTGCTGATTGGGGTGAACACTTAAACTGAATGTGACCTGATGTCACAACAAAAGAAAACCCAACACATAAAAGCAGCTTCACAATAACCGTAATGTTTTGCTCACTGCTGGAGGTAACTCTTGCTCAAAAGACGTTTCCTAGAGTTCCATCTTTCTGCATCGTTGCTGATAGCACTCTGATCTCCTTGTAGTTAGTCTCTCCACTTTCTGTTTGTTAATTCTTTTCACACTGACACACTTATCCTTCCAGAACAGAGTGGATCTTACTACATCATTTTCCTCCTAGAAAGAGTATGATCATAAAATTCGAGCACTTAGGACAAAAGCTTAAAGAACATTGTTTTTTTTTAATACAGATAGTTCTTCTGTATGTAAGTTCCTGTTTAATGAAGCTAGTCTAGCCATCTTTTTTTTTTTTTTTTTTTTTTCCCCTAAGCTGTTTTGTTTGGTTATTTTGCTAAGCAGGACTTCTCTTTGTTTTGTGAAGTGTCCCACATGAAGGGCACAGCCCTAAGAGGGTCAGAGGTAGTGTTAGACATTTATGGCAAGCTGCTTCCTCAAATGAGGAGGATCCAAAGTTTTCACACATGCTAACATTTTTTGTTCTATGTGCTAAAATGTGGTGATTAGCAGCTGTGCTTTAACTAGACTGGCACTGCCTCACCAGCATTATCAGAGTATCTTGCTGGCTGATAAATACAATACAAGCCTCTTGAAATCCTAACTTTGTCTCATCGTTCTTCAACATCCTGAAATCTTAATGTCAAATGATTGCTGGTATGTTTGGTGTGTATGTTTTCTTTTGAGGTACCAACCTTTTGTTGTGTTCTCTATGGAAAAAAATATATATATTCATGGAGTTTGTTTGATGTTGCAACAAGTTGACTTAAAGGTGAATGAACCAGAGCTTCATTTTACCTTTCCAAAGTAAATTAGGGGCTCCCCTACTTTTGTAACATCTGTAAGCTAAAACAAGTGTGTTGACAAGCCATTGAGCTGCATTTCGTCAGCCTTACAAAAGCTTTCCTTGCCCATAGTGAGGCATTGCCATTGGGAGGCAAGTAAAACATTGCAGTTTTCCACTAAAACTGTTGTGCGACTGTAGCACAAATGAAGGCAATATGCTGTATTGACAATCTGGCTGTATACTTTTGCAAGGCTGTGTTGCATGCATGCATTTTACATGTTCTGCTCTCAAGGTCTACCTTCAGGTGTGTTGTAGCAGTCTCCCCAGCACTGTGGTGGGGAAGAACTGTTTACAGAAGGTAGAATTTGGGGCTCTGTGTGTTTCTCCATTTCACTATATAAGCTGCAGAGGTAGAAATAACTGTGGTGTGGGGCTCTGAATGAAACATGGAGGTGGTACACAGGAGGATGTGGTCGGAGCATCCTTCCTGACTCAAATTGCTGATTTTCACAAGCTGCGTTCCCAGGAATTCTACTCTGCAAATTCCTTGCAATGTGGGACTATATAAACTACTTCCTGTTTTAGTGCCTACTAGTCAGGAATTGAAAGCATCCTCAGACTGCCTTAAGCAATACATCTCACTTGTCTGGAATAATAAATACAATGAATGGGGTAAATATCTTGAAGAGTGAATGGATTTAAGCACTAAGCATGTTTTTAAGATGCAAGTACGGTGTTTTTCCTGGAGGGAGGATTTTTTAGAGCCAGTAAGGAATTATTATTACCCAGTACTTGTAGATCTTGTTGCTGACTCTGACTGCATCGCAGCGATGTGACAAGAAACATGGAATCCATCAAAAGATTATCACCTGATTCCAAGATGAAAATGGTATTGCCTTGTCTTTGAGATGTGGCAGAAGGCAGACAAGGATAGGGTATGTACATCATGCATGACTGGTTACAGGGTTGCAACCTTGCAAAGTGAAAGGCTGCCCTGAGGCTAGATAAACTGACTGTGGAAGACTCAGATGAACCACAACCTTCTGTTTGTGTACCAGACAGTTGTATGTGTAATTCCACAGGCGTTTCTGAGTGCCTTCCGCATTGTTATTAGTATGCAGAAAATGCTCAACAGGGCAAGAGTGAATCCGTATCTCCTTTTTTTTTTTCCTCTCCATTTGAGATGTAAGAAAAGATGAGTTAAGATGTGTCACTGTTTTGTGCAAAAAAAAAAAAAAAAAGGTTCTTGGGGACATAACTTGTATTTAAAACATAAGTTTCTTGGAATTCTACCTTTCTTCAGACTTATATATCCACAGCCTCTTCGTTCTTTTGCAGCAGCCTTCAGACCTTTCTTGTATGGGAGCTTTGCTTTGCCATTCCATTTTTTCCTCTCGTTGTTTTCCTCTCTGTGTGATTCTTGCTGTCTTGTCTGTCACCTGTATCTTTTTTCTGCTGTTTTGTTCTCTCTTTTTTCTTTTGTCTCCCCAAACTATCTCCTGGTTCCTCGTTCCCTGCATGCCACTAACTAGTTTCATTAGATGTTAATTGATTTGTGAATTCAGGCTGAATTGCATCATCAGCAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAGGAATCCTCTTCGCTCCTGGAGCCAAGTGAGATGGGAAGAGGTGCCCCGCTACGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256:ENSGALT00000005153:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]