GgaALTA0001587-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4586974-4591848:+
Coord C1 exon
chr27:4586974-4587090
Coord A exon
chr27:4591745-4591765
Coord C2 exon
chr27:4591766-4591848
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TAATTGATTTGTGAATTCAGGCT
3' ss Score
2.8
Exon sequences
Seq C1 exon
AAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
Seq A exon
GCTGAATTGCATCATCAGCAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAGGAATCCTCTTCGCTCCTGGAGCCAAGTGAGATGGGAAGAGGTGCCCCGCTACGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-6-11,6-10,6-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTGGAGCTGACAGAGT
R:
TCCAGGAGCGAAGAGGATTCC
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]