RnoALTA0005214-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88924739-88930924:+
Coord C1 exon
chr10:88924739-88924867
Coord A exon
chr10:88930821-88930841
Coord C2 exon
chr10:88930842-88930924
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TAATTGATTTGTGAATTCAGGCT
3' ss Score
2.8
Exon sequences
Seq C1 exon
GCCAATTTCGAGAAGATCGAAAACGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTAAAGCGAAACTTCCTGGAACTGACTGAATTAAAATTTATACTGCGCAAAACTCAGCAGTTTTTCGATGAG
Seq A exon
GCTGAATTGCATCATCAGCAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCACTCTTGGAGCCAAACGAGATGGGAAGAGGCGCGCCTTTACGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-15-16,15-15,15-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAACTTCCTGGAACTGACT
R:
TGGCTCCAAGAGTGATGAGGA
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]