HsaALTA0000815-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase H+ transporting V0 subunit a1 [Source:HGNC Symbol;Acc:HGNC:865]
Coordinates
chr17:42470090-42477742:+
Coord C1 exon
chr17:42470090-42470218
Coord A exon
chr17:42477639-42477659
Coord C2 exon
chr17:42477660-42477742
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TAATTGATTTGTGAATTCAGGCT
3' ss Score
2.8
Exon sequences
Seq C1 exon
GCCAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAACTTCCTGGAACTGACCGAATTAAAATTTATACTTCGCAAAACTCAGCAATTTTTTGATGAG
Seq A exon
GCTGAATTGCATCATCAGCAG
Seq C2 exon
ATGGCGGATCCAGACTTGTTGGAAGAGTCCTCATCCCTCTTGGAGCCAAGTGAGATGGGAAGAGGCACTCCTTTAAGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627-19-17,19-16,19-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(29.5=93.9)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(14.0=42.9),PF0149614=V_ATPase_I=FE(3.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAACCAGGAAGCTCTGA
R:
TTCCAACAAGTCTGGATCCGC
Band lengths:
113-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains