GgaINT0143416 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:3893697-3894173:+
Coord C1 exon
chr27:3893697-3893699
Coord A exon
chr27:3893700-3894074
Coord C2 exon
chr27:3894075-3894173
Length
375 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCTCTGATTTCTTTTGCAGAGT
3' ss Score
11.67
Exon sequences
Seq C1 exon
AAG
Seq A exon
GTGAGAGAGTGGGGGTAAGGGGCACAGAGCCCCAGTTGGGGAAATAGCAAGAGGGAAGCTCAGGTTTCTTGCAATCAGCTTGTGAAATCCTTCCCTATCTTCTTAAGCATGCACTGATTCGGGGCCTTCTGTTGATATCCTGCGCTCCAGATGTTGGCTGCAGCTGGAGCAGAGATAGTGGGACACTCCCAGGCAGAAGCCGGGCTGTGGGGGAAGGGACCATTGGGCTCTTGTGGATGGGTGGGGAGGGAAAGAGGAATATGAATGTATGGTTGTAAATCCACCCCTACACACCCTCCTTTCTTTTCCCTTACAACCGCTATTCTCAGCAGAGGCAAAGTAAGCCTTTCCAGCACCCTCTGATTTCTTTTGCAG
Seq C2 exon
AGTCGTAAGGACAAAGAAAGACCTAAACAGAAGCACAAAAAACGTCCGGAATCTCCCACCAGCCTTCCAACACCCACGGTGCCCATCGCTGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF045929=SelP_N=FE(0.1=100)
A:
NA
C2:
PF045929=SelP_N=FE(27.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]