GgaINT0143425 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:3903480-3904699:+
Coord C1 exon
chr27:3903480-3903686
Coord A exon
chr27:3903687-3904581
Coord C2 exon
chr27:3904582-3904699
Length
895 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CACCTCCCATTGCCACGCAGGTG
3' ss Score
7.89
Exon sequences
Seq C1 exon
AAATCCTCCCCTCCCCTCGCAGGGATCTACACCAGTAACAAGGACCCTATTTCCCACGGGGGCGGAGTGCTCCGGGCTGTGTGCAGCACACCCCTCTCCTCCAGCCTGCTGGCACACCAGGGCACAGCGTCCATCCCACCGCTCAACCGCTCTCCTTTTGCAAGCACCATCCCCACCTCCTCCTCCTCCTCCGTCTCCACCACGCAG
Seq A exon
GTAAGAGCCTGGGGAGCAGGGTGGCTGTTGTTCAGGAGGGCGCTGCACTGAGCAGGGCTGGTTTGTGGGCACGGAGGAGCTGCTTTTTCCCTTCCTTTGCTTCGGAAGGGAGCTGCCAGCTGCACCTTTCCTTGGCATCACTTAAAAGATGCAGGCAGAGAAAGATGCGGGCAGTTTGGCATCACAGCAACGAAGTTCCCTTGTCCAAATTACTTTAGTCTGGAGACTGCGCTGCTTTGTTGGGTTTTTATACCTGAAAGGTTGCAGAAGTGGCCTAACCCTGAGTCTGTGCTTGCTACAGCTCAGAACATCACTCGATGCACACAACAGGCTGTGTGTCCAGGGCCCTCTGAGGATGCACGTAGCCACTTTGGGGTGAGAGGAGTTGCAGCCTGATGGCGCATTGCTACATTGCTGGTACTGCCAGCACAAGGAAGCACAGCTCAGGTGGTGGAGGTGTGTGCTGTGTCCCTGCTGCTCACCACCAGTGCCAGCCCTCCAGCATGGGGAGCTCAGTGGGAGGCATCTCAGCTGGGTGGGCTGCACGTGTGCCAGAGCACGGAGCCCCGTCCTTTGTTGGGAGCTGGTGGTGAGAGGTGTTTTACAGGGAGGAGAGAGTTAGTTTTACAGCTGCAGCGTTGCTCAGCCCATTCAGACCTCTTGGCTCGGAGATGGGGCTGGGAAGATTTTCAGCTGTCTGCTGGGGCTTCCAGGGAGATATTTTTAACACTCTTTTTCATGACCGAGCCGAGTTCAACAGTCAGGAAGGGAAGGGATAATGAAACCTTATTTTTTTCTTGCGTTTTTGAGAGGTAATCTCTCCCTTTGCCTCCCTCCCACCCCTCTCCTTTCTCTCCCTCCCCACCCCCCCCCCCCACCTCCCATTGCCACGCAG
Seq C2 exon
GTGTTCTCGCTGGCAGGTTCCACCTTCAGCCTCCCCTCCTCCCACATCTTTGGAAGCCCCCTCACATCTGGGCTGTCCATCAACCCGCTCTTAAATCAGTCGGAAAGCAGCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTCCCCTCCCCTCG
R:
GGCTGCTTTCCGACTGATTTA
Band lengths:
319-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]