MmuINT0099390 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97674438-97674882:+
Coord C1 exon
chr11:97674438-97674619
Coord A exon
chr11:97674620-97674773
Coord C2 exon
chr11:97674774-97674882
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTTTGATCCTCCCAACAGGTG
3' ss Score
12.23
Exon sequences
Seq C1 exon
GCATCTATACCAGTAATAAGGATCCCATCTCTCATGGTGGAGGGATGCTGCGGGCTGTCTGCAGCACCCCACTCTCTTCCAGCCTGCTGGGGCCCACAGGAACCTCAGCCTTGCCGCGCCTCAGCCGGTCCCCCTTCACCAGCACCCTTGCATCCTCTTCTGCTTCCATCTCCACCACTCAG
Seq A exon
GTGAGACCCTGCTCCTGGCTCCTCTTCCTGGGCAGGATGGGGACAGAAGCCCTCTGTGGTCCGTGGCCTGTGTCCTCCTGCTCTTCCTTGTTCCCCACCACACAGTACAACTGTATTCAGCTGTGCACGAGGCTCTGTTTGATCCTCCCAACAG
Seq C2 exon
GTGTTTTCTCTGGCTGGCTCAACCTTCAGCCTCCCTTCATCCCACATCTTTGGAACCCCCATGGGCACTGTTAACCCCCTCCTCACCCAAGCGGAGAGCAGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATGGTGGAGGGATGC
R:
GGTGAGGAGGGGGTTAACAGT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types