RnoINT0092962 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85617226-85617672:+
Coord C1 exon
chr10:85617226-85617407
Coord A exon
chr10:85617408-85617563
Coord C2 exon
chr10:85617564-85617672
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTTTGTTCCTCCCAACAGGTG
3' ss Score
13.84
Exon sequences
Seq C1 exon
GCATCTATACCAGTAATAAGGACCCCATCTCTCATGGTGGAGGGATGCTGCGGGCTGTGTGCAGCACCCCACTCTCTTCCAGCCTGTTGGGGCCCACAGGGACCTCAGCCTTGCCCCGCCTCAGCCGGTCCCCGTTCACCAGCACCCTCCCATCCTCCTCTGCTTCCATCTCCACCACTCAG
Seq A exon
GTGAGACCCTGTTCCTGGCTCTTCTCCTGGGCAGGGCGAGGAGAACCCCCGCTGTGGTCCTGTCTTCTCCAGCGGCTCCTTGTTCCCTACCACACAGAATGACCGTGATCAACTGTACCAGCTCCGAGTACAAGCACTGTTTGTTCCTCCCAACAG
Seq C2 exon
GTGTTTTCTCTGGCTGGCTCAACCTTCAGCCTCCCTGCATCCCACATCTTTGGAACCCCTATGGGCACTGTTAACCCCCTCCTCACCCAAGCGGAGAGCAGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATGGTGGAGGGATGC
R:
GGTGAGGAGGGGGTTAACAGT
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]