GgaINT0144353 @ galGal3
Intron Retention
Gene
ENSGALG00000021693 | GP1BA
Description
NA
Coordinates
chr28:768277-769395:+
Coord C1 exon
chr28:768277-768312
Coord A exon
chr28:768313-768756
Coord C2 exon
chr28:768757-769395
Length
444 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAAC
5' ss Score
-1.5
3' ss Seq
AGGTGAAGGACATCGTGGAGGTG
3' ss Score
-13.2
Exon sequences
Seq C1 exon
CGATGTCCATCCCGTGATGGCTGTTCCTGCCCCACG
Seq A exon
GTCAACTGTGCTGAATGCTTGTCCCGCCCATGGCGGGTGCGACGGATCCTGTCCCGACCATGGGGGGTGCCTGGCNNNNNNNNNNTCCAGCCATGTCCTGCAAGAATGGAGGCAAAGCAGCAGGAGAGCAGACACTGAGGGGGTCATGGTGAGCGCAGGGGGAGCGGTGGGCCTTTGGGGTCTGGGTGCTCGGGGTCTGGGTGCTCGGGGTCCACTTTCTCAGGGTCAGAGTGCTTGGGGTCTGGGTGCTGAGTCCGGGTGCTTGGGACGCCCACAAGGCCGGGGCTGCACCCACAGCCACACACAGCTGGGCTCTCCCCGCAGGCCGTGCGGTTTCCCGCTCTGCTCCCGCTGATCCTCGCAGCCCTGCAGCCCGCAGCCGTCCCCGCAGAGCCGCCGCCGCCCTGCCCGTGGGAGATGAACAAGGTGAAGGACATCGTGGAG
Seq C2 exon
GTGAACTGCACTGGGCGGGATCTCAGCGCGGTGCCCGCCGGCCTGCCCGAGAACACGGGCATCCTGCTGCTCAACGCCAACCGCCTGCTGTCCGTCTCCACGGCCGCCTTCCAGAAGCTGGCCGCCCTGCAGGACCTCGACCTGTCTGACAACGGCCTGCAGGCTGTGCTCACTGAGGCCGCGCTGCCCAGCCTGAAGGAGCTGCTGCTGTCCCACAACGCGCTGGAGGCTCTGCCCGCCCTGCAGGGCCTGCCCGCGCTCACCCGCCTGGCCCTGGCTCACAACAAGCTGCAGGCTCTGGCTCCCGCGGCCTTCCGTGCCGTTCCGCAGCTGCAGGACCTGGACCTGCGGGGCAACGCGCTGCGGACACTCCCCGAGGACGCCTTCATGGGGCTGCGAGTGCTGAAGGACTTGGATCTGTCGGACAACGCCTTGGAGGAGCTGCCCAGAGGGCTGCTGCAGGACCTGGTGACGCTGGAGACTCTGTGGCTGTCGGGGAACCGGCTCCGCGCCCTGCCCTCCGGCTTCTTCCCCGAGGGGCACCTCTTCGCCTACGTCTTCCTCACCGAGAACCCCTGGCACTGCGACTGCGACCTGGTCTACCTGCGCTCGTGGATCCTGGGGAACGAGGGGAGCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021693:ENSGALT00000035204:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=PU(39.3=91.7)
A:
NA
C2:
PF0146213=LRRNT=PD(53.6=7.0),PF138551=LRR_8=WD(100=27.7),PF138551=LRR_8=WD(100=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTCCATCCCGTGATG
R:
GGGAGCCAGAGCCTGCAG
Band lengths:
342-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]