MmuINT0072407 @ mm10
Intron Retention
Gene
ENSMUSG00000050675 | Gp1ba
Description
glycoprotein 1b, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1333744]
Coordinates
chr11:70639144-70641820:+
Coord C1 exon
chr11:70639144-70639206
Coord A exon
chr11:70639207-70639403
Coord C2 exon
chr11:70639404-70641820
Length
197 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TGGCATCCCTTTGCCCACAGGTT
3' ss Score
10.52
Exon sequences
Seq C1 exon
AGAGAAGGACCGAGTCATAGCCTGGAAGAAGCTCTGTTCCTCCAAAGGACTGTCTGTCTGACT
Seq A exon
GTAAGCTGGGGCTGGGACCAGAGGTGGAGAAGGTTCTAAGGAGGGAATAAGAACCAAGGGCTGGAGGCAGGGGTGGAAAAGGAGAGAAAAGTCTGGGAGGTGTGGAAGCTGTTTCTAGATGGGATCCTAAGAACTGCAGCAGTGAAGGGCTAAAAGCTGGGAAAATGATGTAATGGGTGGCATCCCTTTGCCCACAG
Seq C2 exon
GTTCATATGGCTCTCCTCATCTTGCTCTTCCTGCTGCCAAGTCCCTTGCATTCCCAGCACACTTGTAGTATCTCCAAAGTGACCAGCCTGCTGGAAGTAAACTGTGAGAACAAGAAGCTGACAGCACTGCCTGCAGACCTGCCAGCAGACACAGGCATCCTCCACCTGGGCGAGAACCAACTGGGTACCTTCTCCACAGCATCACTGGTGCATTTCACTCACCTCACTTATCTGTACCTGGATAGATGTGAGCTGACGAGCCTGCAGACCAATGGTAAACTGATAAAGCTGGAAAACCTGGACTTATCCCATAATAACCTGAAAAGCCTGCCCTCCCTAGGATGGGCATTGCCTGCACTCACTACTCTAGACGTCTCCTTCAACAAGTTGGGCTCACTGTCTCCTGGTGTCCTGGATGGCCTAAGCCAACTCCAAGAGCTCTACTTGCAGAACAATGATCTTAAGAGTCTGCCCCCCGGGCTCTTGTTGCCAACGACCAAGCTGAAGAAACTCAATCTGGCCAACAACAAATTGCGTGAGCTGCCCTCTGGGCTCCTAGATGGGCTGGAGGATCTTGATACCCTCTACCTTCAAAGGAACTGGCTTCGCACAATACCAAAGGGCTTCTTTGGGACCCTCCTCTTGCCTTTTGTTTTTCTCCACGCCAACAGCTGGTACTGTGATTGTGAAATCCTCTACTTCCGTCACTGGCTCCAGGAAAATGCCAACAATGTCTACTTATGGAAGCAGGGTGTGGATGTCAAGGACACAACTCCTAACGTGGCCAGTGTACGATGTGCCAACTTGGACAATGCGCCTGTCTACTCCTACCCAGGGAAGGGCTGCCCTACTAGTAGTGGTGACACAGACTATGATGACTATGATGATATCCCTGACGTCCCTGCCACAAGAACTGAGGTCAAGTTCTCTACTAACACTAAAGTTCATACTACCCACTGGAGCCTACTCGCCGCAGCACCTTCTACTTCTCAAGACAGCCAAATGATTTCTTTGCCTCCAACTCATAAACCCACTAAGAAACAATCTACATTCATCCACACACAGAGCCCAGGTTTCACCACACTCCCAGAGACCATGGAATCTAACCCAACCTTCTACAGTCTAAAACTCAATACTGTACTCATCCCCTCCCCAACCACCCTAGAGCCCACCTCCACCCAGGCTACCCCAGAGCCCAACATCCAACCAATGCTTACCACCTCCACCCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTACCATCCTGACAACCCCAGAGCACAGCACCATCCCAGTGCCCACTACTGCCATCCTGACTACCCCAAAGCCCAGCACCATCCCAGTGCCCACTACTGCCACCCTGACTACCCTAGAGCCCAGCACCACCCCAGTGCCCACTACTGCCACCTTAACTACCCCAGAGCCCAGCACCACCCTGGTACCCACTACTGCCACCCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTGCCACTCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTGCCACCCTGACTACCCCAGAGCCCAGCACCACTTTAACTAATCTAGTGTCCACTATCTCCCCAGTGCTCACTACCACCCTGACCACTCCAGAGTCTACCCCAATTGAGACAATTTTAGAACAATTTTTTACCACAGAGCTCACTTTACTCCCTACCTTAGAATCCACCACCACAATAATCCCAGAGCAGAACAGCTTTCTCAATCTCCCAGAGGTAGCTCTAGTAAGCTCTGATACTTCTGAAAGCAGTCCTTTTCTCAATTCTGACTTTTGCTGCTTCCTCCCCCTGGGCTTCTATGTCCTTGGTCTCCTCTGGCTCCTATTTGCCTCTGTGGTCCTCATCTTGTTGCTGACCTGGACCTGGCATGTGACACCACATAGTCTGGACATGGAACAATCTGCTGCATTGGCCACAAGCACTCACACCACAAGCCTGGAGGTGCAGAGGGCAAGGCAAGTAACTATGCCCCGGGCCTGGCTGCTCTTCCTTCAAGGATCACTCCCTACTTTCCGGTCTAGCCTTTTCCTGTGGGTAAGGCCTAATGGGCGAGTGGGGCCTCTGGTAGCAGGACGGCGACCCTCAGCTCTGAGTCAGGGTCGTGGTCAGGACCTATTGGGCACAGTGGGCATTAGGTACTCAGGCCATAGTCTGTGACAGTGAGTGGAGATCCTACGACTTCACTGGACTCTACTAGGATCTAACTGGGATGGGAGGCTGAGACAATTACAGGACATCCTAGCCATTTCTCCTTTATCTGAAGCCCCCTCTACATCTAGGCACCCAGATCCAGACCTCACAAATCAAGAGGTAGAGGTGATGGAACTGGGTGGTCACAGGATCAGCCTCCCACATTGAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050675:ENSMUST00000108551:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0146213=LRRNT=WD(100=3.8),PF127992=LRR_4=WD(100=6.3),PF138551=LRR_8=WD(100=8.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAAGAAGCTCTGTTCC
R:
ATGCTGTGGAGAAGGTACCCA
Band lengths:
246-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types