MmuINT0072407 @ mm9
Intron Retention
Gene
ENSMUSG00000050675 | Gp1ba
Description
glycoprotein 1b, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1333744]
Coordinates
chr11:70452624-70455557:+
Coord C1 exon
chr11:70452624-70452700
Coord A exon
chr11:70452701-70452905
Coord C2 exon
chr11:70452906-70455557
Length
205 bp
Sequences
Splice sites
5' ss Seq
TCTGTCTGA
5' ss Score
-11.87
3' ss Seq
TGGCATCCCTTTGCCCACAGGTT
3' ss Score
10.52
Exon sequences
Seq C1 exon
TGGCTCTCCTTGCAGCTAGTAGAGAGAAGGACCGAGTCATAGCCTGGAAGAAGCTCTGTTCCTCCAAAGGACTGTCT
Seq A exon
GTCTGACTGTAAGCTGGGGCTGGGACCAGAGGTGGAGAAGGTTCTAAGGAGGGAATAAGAACCAAGGGCTGGAGGCAGGGGTGGAAAAGGAGAGAAAAGTCTGGGAGGTGTGGAAGCTGTTTCTAGATGGGATCCTAAGAACTGCAGCAGTGAAGGGCTAAAAGCTGGGAAAATGATGTAATGGGTGGCATCCCTTTGCCCACAG
Seq C2 exon
GTTCATATGGCTCTCCTCATCTTGCTCTTCCTGCTGCCAAGTCCCTTGCATTCCCAGCACACTTGTAGTATCTCCAAAGTGACCAGCCTGCTGGAAGTAAACTGTGAGAACAAGAAGCTGACAGCACTGCCTGCAGACCTGCCAGCAGACACAGGCATCCTCCACCTGGGCGAGAACCAACTGGGTACCTTCTCCACAGCATCACTGGTGCATTTCACTCACCTCACTTATCTGTACCTGGATAGATGTGAGCTGACGAGCCTGCAGACCAATGGTAAACTGATAAAGCTGGAAAACCTGGACTTATCCCATAATAACCTGAAAAGCCTGCCCTCCCTAGGATGGGCATTGCCTGCACTCACTACTCTAGACGTCTCCTTCAACAAGTTGGGCTCACTGTCTCCTGGTGTCCTGGATGGCCTAAGCCAACTCCAAGAGCTCTACTTGCAGAACAATGATCTTAAGAGTCTGCCCCCCGGGCTCTTGTTGCCAACGACCAAGCTGAAGAAACTCAATCTGGCCAACAACAAATTGCGTGAGCTGCCCTCTGGGCTCCTAGATGGGCTGGAGGATCTTGATACCCTCTACCTTCAAAGGAACTGGCTTCGCACAATACCAAAGGGCTTCTTTGGGACCCTCCTCTTGCCTTTTGTTTTTCTCCACGCCAACAGCTGGTACTGTGATTGTGAAATCCTCTACTTCCGTCACTGGCTCCAGGAAAATGCCAACAATGTCTACTTATGGAAGCAGGGTGTGGATGTCAAGGACACAACTCCTAACGTGGCCAGTGTACGATGTGCCAACTTGGACAATGCGCCTGTCTACTCCTACCCAGGGAAGGGCTGCCCTACTAGTAGTGGTGACACAGACTATGATGACTATGATGATATCCCTGACGTCCCTGCCACAAGAACTGAGGTCAAGTTCTCTACTAACACTAAAGTTCATACTACCCACTGGAGCCTACTCGCCGCAGCACCTTCTACTTCTCAAGACAGCCAAATGATTTCTTTGCCTCCAACTCATAAACCCACTAAGAAACAATCTACATTCATCCACACACAGAGCCCAGGTTTCACCACACTCCCAGAGACCATGGAATCTAACCCAACCTTCTACAGTCTAAAACTCAATACTGTACTCATCCCCTCCCCAACCACCCTAGAGCCCACCTCCACCCAGGCTACCCCAGAGCCCAACATCCAACCAATGCTTACCACCTCCACCCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTACCATCCTGACAACCCCAGAGCACAGCACCATCCCAGTGCCCACTACTGCCATCCTGACTACCCCAAAGCCCAGCACCATCCCAGTGCCCACTACTGCCACCCTGACTACCCTAGAGCCCAGCACCACCCCAGTGCCCACTACTGCCACCTTAACTACCCCAGAGCCCAGCACCACCCTGGTACCCACTACTGCCACCCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTGCCACTCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACTACTGCCACCCTGACTACCCCAGAGCCCAGCACCACTTTAACTAATCTAGTGTCCACTATCTCCCCAGTGCTCACTACCACCCTGACCACTCCAGAGTCTACCCCAATTGAGACAATTTTAGAACAATTTTTTACCACAGAGCTCACTTTACTCCCTACCTTAGAATCCACCACCACAATAATCCCAGAGCAGAACAGCTTTCTCAATCTCCCAGAGGTAGCTCTAGTAAGCTCTGATACTTCTGAAAGCAGTCCTTTTCTCAATTCTGACTTTTGCTGCTTCCTCCCCCTGGGCTTCTATGTCCTTGGTCTCCTCTGGCTCCTATTTGCCTCTGTGGTCCTCATCTTGTTGCTGACCTGGACCTGGCATGTGACACCACATAGTCTGGACATGGAACAATCTGCTGCATTGGCCACAAGCACTCACACCACAAGCCTGGAGGTGCAGAGGGCAAGGCAAGTAACTATGCCCCGGGCCTGGCTGCTCTTCCTTCAAGGATCACTCCCTACTTTCCGGTCTAGCCTTTTCCTGTGGGTAAGGCCTAATGGGCGAGTGGGGCCTCTGGTAGCAGGACGGCGACCCTCAGCTCTGAGTCAGGGTCGTGGTCAGGACCTATTGGGCACAGTGGGCATTAGGTACTCAGGCCATAGTCTGTGACAGTGAGTGGAGATCCTACGACTTCACTGGACTCTACTAGGATCTAACTGGGATGGGAGGCTGAGACAATTACAGGACATCCTAGCCATTTCTCCTTTATCTGAAGCCCCCTCTACATCTAGGCACCCAGATCCAGACCTCACAAATCAAGAGGTAGAGGTGATGGAACTGGGTGGTCACAGGATCAGCCTCCCACATTGAGCCTCCACTCAGAACATTGTCAGGCTACATGGTCACTACTACCACTTTGTGAGGGAAAAAGCTAGAAAAAGCAAACAGAAATGGAGCATGGCTCCCGCTCATTCATACTTGGAAGAAAACTTGGAAAGCCATTAGCCAGGATGGGAGCACTATCCCTAAATATCATGAGTATTTTTTCCCTGTTTAACACTTTCTGGTTTTCTACCAATGTTATCATTTGTATAATAAAAATATTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050675-Gp1ba:NM_010326:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0146213=LRRNT=WD(100=3.8),PF127992=LRR_4=WD(100=6.3),PF138551=LRR_8=WD(100=8.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAAGAAGCTCTGTTCC
R:
AGGCTCGTCAGCTCACATCTA
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: