RnoINT0066486 @ rn6
Intron Retention
Gene
ENSRNOG00000025959 | Gp1ba
Description
glycoprotein Ib platelet alpha subunit [Source:RGD Symbol;Acc:1310239]
Coordinates
chr10:57260680-57263546:+
Coord C1 exon
chr10:57260680-57260764
Coord A exon
chr10:57260765-57260954
Coord C2 exon
chr10:57260955-57263546
Length
190 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
CAAACTCCCTTTGCCCACAGGTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
TGGCTCTCCTTGGAGCTAGTAGAGAGGAGGACCGAGTCATACCCTGGAAGAAGCTCTGTGCCTTCGGAGGTCTTTCTGCCTGACT
Seq A exon
GTAAGCTGGGGCTGGGAGCAGAGGGGGAGGAGGATCTAAGGAGGGACTAAGAACCAAGGACTGGAGGCAGGGGTCTAGGATGGGTAGAAGCTATTTCTAGATGGGATCCTGAGAACTACAGCAGTGAAGGGCTGGAACCTGGGGAAATGATGTAATGGGTGGCATCCCTTCAAACTCCCTTTGCCCACAG
Seq C2 exon
GTTCACATGGCTCTCCTCATCTTGCTGTTCCTGCTGCCAAGTCCCTTACACTCCCAGCCCACTTGTGATGTCTCCAAAGTGACCAGCCTGCTGGAAGTAAACTGTGAGGACAAGAAGCTGAAAAAATTGCCTACAGACCTGCCAGCCGACACAGGCATCCTCCACCTGAGCAAGAACCAACTGGGCACCTTCTCCACATCATACCTGGTGCATTTCACTCACCTTACTCACCTGTACCTGAGTAGATGTGAGCTGACCAGCCTGCAGGCCCATGAGAAACTGTTAAAGCTGGAAACCCTGGACTTATCCCACAATCACCTGCAAAGTCTGCCCTCCCTAGGACGGGCACTGCCTGCACTCACTACTCTAGACGTCTCCTTCAACAAGCTGGGTTCACTGTCTCCTGGTGCCCTGGAAGGCCTGGGCCAACTCGAGGAACTCTACTTGCAGAACAATGATCTTAAGAGTCTGCCCCCTGGGCTCTTAATGCCCACAACTAAGCTGTTGAAACTCAGTCTGGCCAACAACAAACTTCGTGAGCTGCCCCCTGGGCTCCTAGATGGACTAGAGGATCTTGACACCCTCTACCTTCAAGGGAACTGGCTCAGCACAATACCAAAGGGCTTCTTTGGGTCCCTCCTCTTGCCTTTTGTTTTTCTCCATGCCAACACCTGGTACTGTGATTGTGAAATCCTCTACTTCCGTAACTGGCTCCAAGAAAACCCCAACCGTGTCTACTTATGGAAGGAGGGTGTAGATGTCAAGGCCATGACTGCTAACGTGGCCAGTGTACGATGTGCCAATTTGGGCAATGCGCCTGTCTACTCCTACCCAGGGAAGGGCTGCCCTACCAATGAGGGTGACATAGACTATGATGACTATGCTGATACCCCTACCACAAGGACTGAGGTGAAGTTCTCTACTAACACTAAAGCTCATACTACCTACTGGGGCCTATTCTACTCAGAGTCTTCCACTTCTCCAGACAGCCAAATGACTTCTTTGCCTCCCATCCACGAACCCACTAAGAAACAACCTACATTTGCCCACACAGAGATCCCAGGTTTCACCACACTCCCAGATACCATGGAATCCAACACAGCCTTCTACAGTCTAAACAATACTGTACCCACCACCACCCCAGAGCCCACCTCCACCCAGGCTACCCCAGAGCCCAGCAGCACCCCAATGCTTACCACTCCTGTGCCTACCCCAGAGCCCAGCAGCATCCCAATGCTTACCGTTCCTGTGTCTACCCCAGAGCCCAGCAGCACCCCAATGCTTACCACTCCCGTGTCTACCCCAGAGCCCAGCAGCATCCCAATGCCTACCATTCCCGTGCCTACCCCAGAGCCCAGCAGCATCCCAATGCCTACCATTCCCGTGCCTACCCCAGAGCCCAGCAGCACCCCAATGCCTACCATTCCTGTGCCTACCCCAGAGCCCAGCAGCACCCCAATGTTTACCACACCTGTGCCTACCCCAGAGCCCAGCAGTACCCCAATGCTTACCACTCCCACCCTGACTACCCCAGAGTCCAGCAGCACCCCAAGTATTCTAGTGTCTACTATCCCCCCAGTGCTCACTACCACCCTGGCCCCTCCAGAGTCTATCCCAAAGACCGTTTTAGAACAATTTTATACCCTAGAGCCCACTTTACCCCGTACCTTAGAATCCACAATAATAATCCCAGAGCAGAATAGTCTAAATTCCCAAGCGGTGCCTCAAGCAAGTTCTGATACTCCTAAAAGCAATCCTTTTCTCAACTCTGACTTCTGTTGCCTCCTCCCCCTGGGCTTCTATGTTCTGGGTCTCCTCTGGCTCTTATTTGCCTCTGTGGTCCTCATTGTGTTGCTGACCTGGATCTGGCATGTGACACCGCACAATCTAGACATGGACCAATCTGCTGCACTGGCCACAAGCACACACACCACAAGCCTGGAAATGCAGAGAGCAAGGCAAGTAACTATGCCCTGGGCCTGGCTGCTCTCCCTTCAAGGATCACTCCCTACTTTCCGGTCTAGCCTTTTCCTGTGGGTAAGGCCTAATGGGCGTGTGGGGCCTCTGGTAGCAGGACGGAGACCCTCAGCTCTGAGTCAGGGTCATGGTCAGGACCTATTGGGCAGAGTGGGTATTAGGTACTCAGGCCACAGTCTGTGACAGTGAATGCTAAGACTTTACTGGACTCTCCTAGGACCTAGCTAGGACAGGAGGTTGAGAGCATTACAGGACCTCCTATTTACTTCTCGTTTATCTGAAGCCCCTTCTTTACATCTAGGCACCCAAATCCAAACCTTACAAATCAAGAGGTAGTGAGGTGATGTATCCCTGTGGTCACAGGACCAACCTCCCTCCGTTGCTTAGAGCATTGCCAGGCTACATGGTCACTACCACTTTGTGGGGGGAAAAAAGAGCTGGAAAAAGCAGATAGGAATAGTGTGGCTCCCAAATGTTCACCCATGGAAGAAAACGTGGAAAGTCATTCATCAGGATGGGAGCACTACCCCTAAGTATCATGAGTACTTTTCCCTTGGTTAACACTCTGGTTTTCTACCAGTGTTATCATTTGTATAATAAAACTATTTTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025959:ENSRNOT00000035445:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0146213=LRRNT=WD(100=3.9),PF138551=LRR_8=WD(100=7.8),PF138551=LRR_8=WD(100=8.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGAGTCATACCCTGGAA
R:
AAGGTGCCCAGTTGGTTCTTG
Band lengths:
248-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]