GgaINT0144392 @ galGal4
Intron Retention
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:625656-626496:+
Coord C1 exon
chr28:625656-625921
Coord A exon
chr28:625922-626359
Coord C2 exon
chr28:626360-626496
Length
438 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CACGATACTTCCCTCCTCAGGCC
3' ss Score
8.49
Exon sequences
Seq C1 exon
TTACAGTGACCCCAAAATGTGGGTGGCCTTTCTGGGAACGCCCTTCCTGAATGGCAACGATGGCAAAATGGAGAAAATATTCCGTATCTACAAGCACCCTTTTTACAACGTCTACAGCCTGGACTACGACGTGGCGCTGCTGGAGCTGAGCGCGCCCGTCAGGTTCAGCAGCACCATCAAACCCATCTGTCTCCCAGACAACTCACACATCTTCCAGGAAGGAGCCAGGTGCTTCATCACAGGCTGGGGCTCCACCAAGGAAGGAG
Seq A exon
GTACTGCCTGGAGGGGCTCCGTCACACTCACGATGGCCACATTAAGTGCCACGCACCCTGCAGGCCCCACTACACTTCCCATCCCACTGCCCCAAATATTCCACATAACTGTAGGGGATACCTCTGCCCCCCACAGGCTGTACCCATCCATCTGGTTACACCTCCCAAGCTTTCTAACGCCAGCCATGGCACTCCCCATCCCTTCAGCTGCTCCAGCAATGCTCCTGCAATCCCATTTCTATCTGGTTGGCTGCAATGCTTGATAAACAATAGCCCAAAAGGACCTTCCTGTGCTTCCTCTGCTGGAGAGGAACCAGGCCTGGGTCACCTTCCCAGTGCAGGTCTGTCCCTCTGGCACATGAGTAAAGCTACAGAGACCCACATGCTTGTATTTCTTGTGTTCTCTGCACCAAACTAACACGATACTTCCCTCCTCAG
Seq C2 exon
GCCTCATGACAAAGCACCTGCAAAAAGCAGCAGTGAATGTGATTGGAGACCAGGACTGCAAAAAGTTCTATCCTGTCCAGATCAGCAGCAGGATGGTGTGTGCTGGTTTCCCGCAGGGTACCGTCGACAGTTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458:ENSGALT00000000620:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGGGTGGCCTTTCTGG
R:
CACCATCCTGCTGCTGATCTG
Band lengths:
350-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]